Alternatives and similar repositories for PDC-Public

Users that are interested in PDC-Public are comparing it to the libraries listed below

• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated 2 weeks ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 6 months ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆25Updated 2 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated last week
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 10 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated 10 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆67Updated last year
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 5 years ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• opentargets-archive / opentargets-py
  Python client for the Open Targets REST API at targetvalidation.org
  ☆25Updated 4 months ago
• bhklab / PGx_Guidelines
  ☆10Updated 4 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated 2 weeks ago
• broadinstitute / g2papi
  Python Client Library for the G2P Portal API
  ☆15Updated 4 months ago
• astrazeneca-cgr-publications / milton-release
  MILTON: Disease prediction with biomarkers and augmented PheWAS analyses
  ☆42Updated last year
• saramasarone / enrich_omics
  A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
  ☆20Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆65Updated last month
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 2 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆24Updated 5 months ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆21Updated this week
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated 3 weeks ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆24Updated 6 months ago