Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
☆49Mar 3, 2026Updated this week
Alternatives and similar repositories for proteinpaint
Users that are interested in proteinpaint are comparing it to the libraries listed below
Sorting:
- ☆14Oct 9, 2025Updated 5 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Feb 26, 2026Updated last week
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Javascript library for visualizing genomics data with D3.☆19Jan 6, 2017Updated 9 years ago
- ☆12Apr 3, 2025Updated 11 months ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆42Nov 28, 2025Updated 3 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Mar 2, 2026Updated last week
- Robust Allele Specific Quantification and quality controL☆40Dec 13, 2021Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Mar 20, 2025Updated 11 months ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated 2 weeks ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 8 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 3 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Mar 7, 2014Updated 12 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- ☆13Feb 12, 2026Updated 3 weeks ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Jan 30, 2019Updated 7 years ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆87Nov 24, 2025Updated 3 months ago
- ☆12May 4, 2022Updated 3 years ago
- ☆11Dec 8, 2022Updated 3 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Mar 1, 2026Updated last week
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Feb 23, 2026Updated last week
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 2 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- This is the development fork - Stable code has been moved to ==>☆27Nov 20, 2019Updated 6 years ago
- web based visualisation of CLMS data☆13Nov 22, 2022Updated 3 years ago
- ☆14Mar 14, 2024Updated last year
- A MatchMaker Exchange server☆12Jul 24, 2025Updated 7 months ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago