stjude / proteinpaintLinks
Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
☆42Updated this week
Alternatives and similar repositories for proteinpaint
Users that are interested in proteinpaint are comparing it to the libraries listed below
Sorting:
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 8 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Builds a PEP from SRA or GEO accessions☆53Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- interactive plots for differential expression analysis☆34Updated 5 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 7 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Updated last week
- iread☆25Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated last week
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago