stjude / proteinpaintLinks
Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
☆35Updated this week
Alternatives and similar repositories for proteinpaint
Users that are interested in proteinpaint are comparing it to the libraries listed below
Sorting:
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Code for RNA-seq gene coexpression analysis☆10Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 6 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 2 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- iread☆25Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆13Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆27Updated this week