saeyslab / moduledetection-evaluationLinks
☆34Updated 4 years ago
Alternatives and similar repositories for moduledetection-evaluation
Users that are interested in moduledetection-evaluation are comparing it to the libraries listed below
Sorting:
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- netZooR is a network biology package implemented in R.☆114Updated 3 months ago
- ☆85Updated 5 years ago
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Updated 9 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆142Updated last year
- ☆67Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- An R interface to enrichR☆93Updated 10 months ago
- A continually expanding collection of cancer genomics notes and data☆110Updated last month
- Geometry-preserving random sampling☆95Updated last year
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 4 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated 2 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 5 years ago
- ☆62Updated 5 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- Multi-Omics Factor Analysis☆253Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Updated last month