Alternatives and similar repositories for moduledetection-evaluation

Users that are interested in moduledetection-evaluation are comparing it to the libraries listed below

• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆90Updated 5 years ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆87Updated 7 months ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 9 years ago
• rhondabacher / ISMB2019_SingleCellTutorial
  Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…
  ☆41Updated 5 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆148Updated last year
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆104Updated last month
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆93Updated 4 years ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆32Updated 3 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆50Updated 11 months ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆88Updated 11 months ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆74Updated last week
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆90Updated 2 years ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆43Updated last year
• velocyto-team / velocyto-notebooks
  ☆55Updated 7 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆83Updated last year
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 4 months ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆44Updated 5 years ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated 2 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆64Updated last year
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆75Updated last month
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆38Updated 5 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last year
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆90Updated 11 months ago