Scripts and Snakemake pipeline used in the EMBL-ABR webinar
☆13Jul 24, 2019Updated 7 years ago
Alternatives and similar repositories for 2019_EMBL-ABR_Snakemake_webinar
Users that are interested in 2019_EMBL-ABR_Snakemake_webinar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…☆15Mar 30, 2016Updated 10 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- ☆13Apr 14, 2026Updated 3 months ago
- R Warrior - R implemention of Ruby Warrior☆10Sep 18, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated last year
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆50Oct 13, 2025Updated 9 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- ☆16Feb 17, 2025Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- ☆10Oct 6, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phylogenetic profiling with orthology data☆13Jul 9, 2026Updated 2 weeks ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆107Nov 22, 2022Updated 3 years ago
- R package: a tile-based roguelike toy for R's console, featuring procedural dungeons and enemy pathfinding☆18Jan 3, 2023Updated 3 years ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated last year
- Home Assistant Custom Component: NSW Rural Fire Service Fire Danger☆13Jul 21, 2026Updated last week
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26May 15, 2024Updated 2 years ago
- Integrative clustering for heterogeneous biomedical datasets.☆16May 4, 2020Updated 6 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 2 months ago
- Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edw…☆43Jun 24, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Methods to compute Local Inverse Simpson's Index (LISI)☆79Sep 2, 2021Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30May 8, 2018Updated 8 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.☆14Sep 16, 2020Updated 5 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- multi-tool QC for minion data☆10May 28, 2018Updated 8 years ago
- Code for 'Teaching with Interactive Data Visualization' site☆22May 6, 2015Updated 11 years ago