nathanhaigh / 2019_EMBL-ABR_Snakemake_webinarLinks
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
☆13Updated 5 years ago
Alternatives and similar repositories for 2019_EMBL-ABR_Snakemake_webinar
Users that are interested in 2019_EMBL-ABR_Snakemake_webinar are comparing it to the libraries listed below
Sorting:
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 8 months ago
- ☆21Updated 10 months ago
- Htmlwidgets binding R commands to the BioCircos.js library☆40Updated 6 years ago
- R interface to the JBrowse 2 Linear Genome View.☆37Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Glimma R package☆50Updated 10 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- ☆16Updated 8 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- Representation and manipulation of genomic intervals☆46Updated 3 weeks ago
- Genomic plot in trellis layout☆40Updated last year
- ☆29Updated 11 months ago
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- fastqcr: Quality Control of Sequencing Data☆73Updated last year
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 10 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 4 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- A tidy interface for coverage analysis☆30Updated 5 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago