vahuynh / dynGENIE3Links
Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
☆26Updated 5 months ago
Alternatives and similar repositories for dynGENIE3
Users that are interested in dynGENIE3 are comparing it to the libraries listed below
Sorting:
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆31Updated 6 years ago
- Scalable Tool for Gene Network Reverse Engineering☆24Updated 2 weeks ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- ☆55Updated 9 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 months ago
- Explore and download data from the recount3 project☆36Updated last month
- Fast motif matching in R☆46Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆37Updated 3 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated last month
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆46Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 6 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago