vahuynh / dynGENIE3Links
Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
☆25Updated 2 months ago
Alternatives and similar repositories for dynGENIE3
Users that are interested in dynGENIE3 are comparing it to the libraries listed below
Sorting:
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- PHATE dimensionality reduction method implemented in R☆79Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- Scalable Tool for Gene Network Reverse Engineering☆24Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆55Updated 7 months ago
- GWAS gold standards repository☆38Updated last year
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- ☆29Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- Population balance analysis☆44Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago