vahuynh / dynGENIE3Links
Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
☆24Updated this week
Alternatives and similar repositories for dynGENIE3
Users that are interested in dynGENIE3 are comparing it to the libraries listed below
Sorting:
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆31Updated 6 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Scalable Tool for Gene Network Reverse Engineering☆24Updated last year
- ☆43Updated last year
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆43Updated 7 months ago
- ☆35Updated 3 months ago
- ☆17Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆20Updated 4 years ago
- ☆29Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago