Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
☆29Jun 23, 2025Updated last year
Alternatives and similar repositories for dynGENIE3
Users that are interested in dynGENIE3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆102Sep 24, 2021Updated 4 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 2 months ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆16Jun 19, 2026Updated 2 weeks ago
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆15Aug 13, 2025Updated 10 months ago
- ☆12Jan 27, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- ☆15Jan 18, 2023Updated 3 years ago
- Reasoning on the response of logical signaling networks with Answer Set Programming☆15Feb 10, 2026Updated 4 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 7 months ago
- R package IReNA☆31Nov 13, 2024Updated last year
- Single Cell multimodal data scripts for downloading datasets☆19May 20, 2026Updated last month
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆31Mar 18, 2022Updated 4 years ago
- Constrained LUmping of differential Equations☆13Sep 12, 2024Updated last year
- ☆27Sep 2, 2021Updated 4 years ago
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 4 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- ☆13Jun 22, 2026Updated last week
- A tidy interface for coverage analysis☆33Feb 18, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- AR1MA1 - VBEM reverse engineering GRNs method☆11Sep 26, 2019Updated 6 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Website for Introduction to Data Science at University of Edinburgh, 2020.☆11Jan 30, 2022Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- ☆21May 14, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jun 4, 2023Updated 3 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants☆25Mar 16, 2026Updated 3 months ago
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated 3 months ago
- ☆16Mar 6, 2025Updated last year
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago