Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
☆29Jun 23, 2025Updated 11 months ago
Alternatives and similar repositories for dynGENIE3
Users that are interested in dynGENIE3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆101Sep 24, 2021Updated 4 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated last month
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆16May 18, 2026Updated last week
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆14Aug 13, 2025Updated 9 months ago
- ☆12Jan 27, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- ☆15Jan 18, 2023Updated 3 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- R package IReNA☆31Nov 13, 2024Updated last year
- Single Cell multimodal data scripts for downloading datasets☆18Updated this week
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated 2 months ago
- ☆29Mar 18, 2022Updated 4 years ago
- Constrained LUmping of differential Equations☆13Sep 12, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆27Sep 2, 2021Updated 4 years ago
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆51Oct 4, 2024Updated last year
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 4 years ago
- ☆13Mar 27, 2026Updated last month
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- A tidy interface for coverage analysis☆33Feb 18, 2020Updated 6 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- AR1MA1 - VBEM reverse engineering GRNs method☆11Sep 26, 2019Updated 6 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Website for Introduction to Data Science at University of Edinburgh, 2020.☆11Jan 30, 2022Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated 11 months ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- ☆20May 14, 2026Updated last week
- ☆15Jun 4, 2023Updated 2 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants☆23Mar 16, 2026Updated 2 months ago
- ☆15Mar 6, 2025Updated last year
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- ☆36Mar 31, 2026Updated last month
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆44Mar 13, 2026Updated 2 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago