vahuynh / dynGENIE3Links
Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
☆24Updated last month
Alternatives and similar repositories for dynGENIE3
Users that are interested in dynGENIE3 are comparing it to the libraries listed below
Sorting:
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated last month
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆33Updated 3 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 11 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- PHATE dimensionality reduction method implemented in R☆79Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- ☆43Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Scalable Tool for Gene Network Reverse Engineering☆24Updated last year
- Explore and download data from the recount3 project☆36Updated 2 months ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆44Updated 4 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 4 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆16Updated 5 years ago