Alternatives and similar repositories for OpenPBTA-manuscript

Users that are interested in OpenPBTA-manuscript are comparing it to the libraries listed below

• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 3 months ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆26Updated 2 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 2 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 2 weeks ago
• jtextor / epitope-prediction
  R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.
  ☆15Updated 4 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 2 months ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆15Updated this week
• UCLouvain-CBIO / WSBIM1322
  Bioinformatics course (WSBIM1322)
  ☆17Updated last month
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last month
• egeulgen / driveR
  Prioritizing Cancer Driver Genes Using Genomics Data
  ☆17Updated 2 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• sarbal / EGAD
  Gene network analysis
  ☆19Updated 2 years ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆41Updated last month
• zhilongjia / cogena
  co-expressed gene-set enrichment analysis
  ☆12Updated last year
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last month
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 2 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• sunshanwen / BP4RNAseq
  An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…
  ☆14Updated 3 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last month
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated 4 months ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 5 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 3 years ago
• yan-cri / DEApp
  DEAPP shiny App
  ☆30Updated 3 years ago