AlexsLemonade / OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
☆13Updated last year
Alternatives and similar repositories for OpenPBTA-manuscript:
Users that are interested in OpenPBTA-manuscript are comparing it to the libraries listed below
- Multi-omics data normalisation, model fitting and visualisation.☆24Updated last year
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19Updated 4 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆18Updated 2 years ago
- GWAS gold standards repository☆30Updated last year
- Statistical power studies for multi-omics experiments.☆30Updated last week
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated last month
- Workflow for single-cell RNA-seq analysis using Seurat☆39Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- R package providing query functionality to BioMart instances like Ensembl☆38Updated 5 months ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆24Updated 4 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Mean Alterations Using Discrete Expression☆14Updated 9 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 weeks ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Lollipop-diagram to interactively visualize genetic mutations☆31Updated 4 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week
- Template for building a bioconductor workshop package using github actions☆19Updated 6 months ago
- This is the ensembldb development repository.☆33Updated 5 months ago
- Course Materials for Genomics Data Mining☆22Updated this week
- Code for Celia and Nils' immune aging project.☆9Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago