An R package that provides Rust-based interfaces into your favourite bioinformatics, computational biology methods
☆34May 11, 2026Updated last week
Alternatives and similar repositories for bixverse
Users that are interested in bixverse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 2 months ago
- ☆29Updated this week
- ☆15Jan 13, 2021Updated 5 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- Statistical design and analysis of experiments with R☆22Jan 6, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 2 weeks ago
- The Bioconductor Build System☆13May 12, 2026Updated last week
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 4 years ago
- Oxbow makes genomic data ready for high-performance analytics.☆153May 7, 2026Updated last week
- Tool for analyzing clusters of genes using LLM providers.☆29Updated this week
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- ☆45Oct 30, 2024Updated last year
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆23Nov 18, 2024Updated last year
- R package for querying the OMIM database☆17Sep 14, 2025Updated 8 months ago
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆36May 27, 2025Updated 11 months ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆61May 11, 2026Updated last week
- Utility functions for weights and biases (wandb).☆11Sep 17, 2024Updated last year
- Accelerated array computing and code transformations for R☆63Updated this week
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- ☆16May 23, 2022Updated 3 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Codebase for "WhAM: Towards A Translative Model of Sperm Whale Vocalization" (NeurIPS 2025)☆55Mar 10, 2026Updated 2 months ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆100Nov 24, 2025Updated 5 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 5 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆102Apr 24, 2026Updated 3 weeks ago
- ☆14Mar 7, 2024Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆58Oct 8, 2021Updated 4 years ago
- Full feature implementation of hash/associated arrays/dictionaries in R☆29Feb 5, 2019Updated 7 years ago
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 7 months ago
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆14Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- pixi-to-conda-lock converts a pixi.lock file to a conda-lock.yml file☆15Jan 19, 2026Updated 4 months ago
- Repository for “Introduction to Generative Art and Scientific Visualization” mini-course taught at Harvard January@GSAS☆15Jan 15, 2023Updated 3 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- ☆20Mar 28, 2017Updated 9 years ago
- Parseltongue is a DSL for systems which refuse to speak falsehood☆85Apr 28, 2026Updated 3 weeks ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 31, 2026Updated last month