GregorLueg / bixverseLinks
An R package that provides Rust-based interfaces into your favourite bioinformatics, computational biology methods
☆32Updated this week
Alternatives and similar repositories for bixverse
Users that are interested in bixverse are comparing it to the libraries listed below
Sorting:
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 6 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆60Updated last year
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- ☆44Updated 11 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆59Updated 4 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 3 months ago
- Functional Associations using Variational Autoencoders☆40Updated this week
- R client for the OmniPath web service☆145Updated 2 weeks ago
- Workflow for single-cell RNA-seq analysis using Seurat☆45Updated last year
- Explore and download data from the recount3 project☆36Updated 2 weeks ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆111Updated 3 weeks ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆37Updated last month
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆76Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Defense Against the Dark Arts☆79Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- metadata and data from the database☆41Updated 5 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- Geometry-preserving random sampling☆89Updated 11 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆83Updated 10 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆47Updated this week
- Signac☆25Updated 2 years ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆23Updated 3 years ago
- ☆19Updated last year
- ☆12Updated 2 months ago