Alternatives and similar repositories for ME-VAE_Architecture

Users that are interested in ME-VAE_Architecture are comparing it to the libraries listed below

• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆63Updated 5 months ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆63Updated last month
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆21Updated 6 months ago
• AstraZeneca / ibd-interpret
  We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…
  ☆16Updated 2 years ago
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆14Updated 3 weeks ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆57Updated last year
• mahmoodlab / KRONOS
  Foundation Model for Multiplex Spatial Proteomic Images
  ☆66Updated last month
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated 11 months ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆53Updated last year
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆125Updated 3 years ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆29Updated 3 weeks ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆150Updated 8 months ago
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆35Updated 3 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 10 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆32Updated 5 months ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆60Updated last week
• uhlerlab / cross-modal-autoencoders
  ☆55Updated 2 years ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆104Updated 3 years ago
• instanseg / instanseg
  ☆173Updated last week
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆94Updated 2 weeks ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆30Updated 3 years ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 5 months ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆53Updated 3 years ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆29Updated 3 months ago
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆79Updated 8 months ago
• biomed-AI / Hist2ST
  ☆44Updated 3 years ago
• GuangyuWangLab2021 / Loki
  ☆76Updated last month
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆35Updated 3 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆102Updated 5 months ago