Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique structure (DIVAS), VAEs/conditional VAEs, and key baselines (MOFA, JIVE, SNF) with practical tips + code.
☆96Dec 28, 2025Updated 10 months ago
Alternatives and similar repositories for Multi-omics
Users that are interested in Multi-omics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plain-language guide to causal inference for microbiome & multi-omics: DAGs/backdoor, confounders vs mediators/colliders, causal mediatio…☆19Jan 15, 2026Updated 9 months ago
- Benchmarking for gene expression from single cell latent representations☆22Updated this week
- Shiny app to easily create publishable plots for scientific papers☆44Aug 9, 2025Updated last year
- A practical guide to modern bioinformatics☆35Jul 27, 2026Updated 3 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆32Oct 26, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776)☆10Oct 23, 2026Updated last week
- A collection of easy-to-use custom ggplot2-based functions for data exploration and analysis. Each function handles data preprocessing an…☆27Dec 23, 2025Updated 10 months ago
- Vibe coding via Claude Code & Codex☆30Oct 21, 2026Updated last week
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆23Feb 10, 2025Updated last year
- Highly informative TCR representation model☆19Nov 26, 2025Updated 11 months ago
- RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.☆20Oct 15, 2026Updated 2 weeks ago
- ☆13Oct 10, 2026Updated 3 weeks ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- Intermediate Machine Learning course of the Swiss Institute of Bioinformatics☆15Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official repository of the data-driven deconvolution approach Sweetwater.☆16Sep 9, 2025Updated last year
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I ’ve developed to make bioinformatics more accessib…☆535Dec 26, 2025Updated 10 months ago
- Tutorial on large language models for genomics☆291Jun 5, 2025Updated last year
- Explainable AI for Bioinformatics☆128Apr 3, 2023Updated 3 years ago
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆18Oct 12, 2026Updated 3 weeks ago
- This repo aims to highlight microbiome-metabolome integration using the python ecosystem.☆10Aug 24, 2026Updated 2 months ago
- Beginner-friendly introduction to single-cell RNA-seq analysis using Scanpy, designed for lab onboarding.☆14Apr 15, 2026Updated 6 months ago
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 3 years ago
- Integrating data from multiple omics modalities to build and analyze feature-level networks.☆11Oct 31, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- factor models for omics data☆49Updated this week
- python scripts for proteogenomics analysis☆11Oct 17, 2019Updated 7 years ago
- ☆19Oct 22, 2025Updated last year
- ☆25Oct 2, 2026Updated last month
- R package providing a tidy grammar of population genetics, facilitating the manipulation and analysis of large datasets of biallelic sing…☆17Updated this week
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆111Oct 9, 2026Updated 3 weeks ago
- ☆23Jun 5, 2021Updated 5 years ago
- From Millions to Hits: A Practical HTVS Workflow☆20Sep 6, 2026Updated last month
- Repository for the ISMB/ECCB workshop "A practical introduction to multi-omics integration and network analysis"☆11Jul 23, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆28Jan 29, 2026Updated 9 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆84Apr 16, 2026Updated 6 months ago
- List of Spatial Transcriptomics related Tools organized per category☆212Sep 9, 2026Updated last month
- team lander github repo☆10Aug 7, 2021Updated 5 years ago
- CELLama Project☆23Jul 30, 2026Updated 3 months ago
- ☆10Jun 13, 2025Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆38Feb 10, 2025Updated last year