Vignettes to process data and generate figures for the EPI-clone paper
☆13May 21, 2025Updated last year
Alternatives and similar repositories for EPI-clone
Users that are interested in EPI-clone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆13Mar 22, 2024Updated 2 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 3 years ago
- scDNAm-GPM: A Generative Language Mamba for Analyzing Single-Cell Whole-Genome Bisulfite Sequencing☆20Aug 7, 2026Updated 2 months ago
- ☆34Jul 7, 2026Updated 3 months ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆14May 4, 2022Updated 4 years ago
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.☆10Apr 17, 2024Updated 2 years ago
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆19Jun 30, 2026Updated 3 months ago
- Rust wrapper for STAR aligner☆23Apr 13, 2026Updated 6 months ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆21Apr 15, 2024Updated 2 years ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modeling of time series data for CRISPR KO experiments☆42Oct 1, 2026Updated 3 weeks ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- Tools for single-cell data processing☆138May 27, 2024Updated 2 years ago
- Python package with CLI for the analysis of single cell methylation data.☆22Oct 29, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆13Mar 3, 2025Updated last year
- ☆13Sep 24, 2025Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- ☆12Sep 8, 2021Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 10 months ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆23May 19, 2026Updated 5 months ago
- ☆66Jul 23, 2024Updated 2 years ago
- ☆18Apr 17, 2025Updated last year
- ☆18Jan 30, 2026Updated 8 months ago
- 算法第四版 python实现的示例和部分习题解答☆14Mar 6, 2022Updated 4 years ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Pipeline to run scE2G☆67Oct 16, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Jun 8, 2023Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- Predict 3D genome structure from Fiber-seq data.☆13Aug 5, 2025Updated last year
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago