chenhcs / FRoGSLinks
Functional Embedding of Gene Signatures
☆46Updated last year
Alternatives and similar repositories for FRoGS
Users that are interested in FRoGS are comparing it to the libraries listed below
Sorting:
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Python package to load and query ARCHS4 data☆23Updated last month
- ☆27Updated 4 months ago
- flexible CDR based distance metrics☆66Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- ☆38Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆29Updated 2 months ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆25Updated 6 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- CLUMPS adapted to post-translational modifications.☆10Updated 3 months ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆70Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆19Updated 2 weeks ago
- ☆37Updated 3 months ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆37Updated last week
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆43Updated 3 weeks ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated last week
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- ☆17Updated 4 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆55Updated last year