chenhcs / FRoGSLinks
Functional Embedding of Gene Signatures
☆46Updated last year
Alternatives and similar repositories for FRoGS
Users that are interested in FRoGS are comparing it to the libraries listed below
Sorting:
- Python package to load and query ARCHS4 data☆23Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆27Updated 6 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- flexible CDR based distance metrics☆67Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- CLUMPS adapted to post-translational modifications.☆10Updated 4 months ago
- ☆42Updated 4 months ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 4 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- ☆38Updated last year
- ☆29Updated 3 months ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated last month
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Predictor of TCR-epitope interactions☆34Updated last month
- ☆19Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆39Updated last week
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆21Updated last week
- A Deep Learning based Efficacy Prediction System for drug discovery☆71Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated last week
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year