A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature
☆93May 9, 2026Updated last month
Alternatives and similar repositories for BioMiner
Users that are interested in BioMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [CVPR 26] MarkushGrapher-2: End-to-end Multimodal Recognition of Chemical Structures☆65May 29, 2026Updated 2 weeks ago
- ☆27Jul 3, 2024Updated last year
- ☆29Jun 2, 2026Updated 2 weeks ago
- ☆48Nov 29, 2025Updated 6 months ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆21Dec 24, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆18Sep 30, 2025Updated 8 months ago
- ☆15Dec 4, 2023Updated 2 years ago
- FASTDock: A Pipeline for Allosteric Drug Discovery - example scripts and jupyter notebook☆19Jun 10, 2023Updated 3 years ago
- Cloud-based Drug Binding Structure Prediction☆48Feb 9, 2026Updated 4 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆41Jan 2, 2026Updated 5 months ago
- Fully automated high-throughput MD pipeline☆97Mar 11, 2026Updated 3 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆90Oct 6, 2025Updated 8 months ago
- ☆26Feb 4, 2025Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆174Feb 6, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆23Mar 13, 2026Updated 3 months ago
- Plausibility checks for generated molecule poses.☆381Mar 7, 2026Updated 3 months ago
- Structure-based drug design based on Retrieval Augmented Generation☆28Nov 7, 2025Updated 7 months ago
- ☆53Apr 23, 2026Updated last month
- Serializing molecule 3D structures☆14Nov 27, 2024Updated last year
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆13Jul 8, 2025Updated 11 months ago
- ☆13Jul 11, 2023Updated 2 years ago
- PairMap: An Intermediate Insertion Approach for Improving the Accuracy of Relative Free Energy Perturbation Calculations for Distant Comp…☆17Mar 18, 2026Updated 3 months ago
- ☆26Aug 18, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation☆11Jul 28, 2022Updated 3 years ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- ☆13May 18, 2025Updated last year
- Robust Molecular Structure Recognition with Image-to-Graph Generation☆309Jan 9, 2025Updated last year
- Toolkit for alphafold3 input and output files☆104Jun 10, 2026Updated last week
- Official code repo for the paper "ChemToolAgent: The Impact of Tools on Language Agents for Chemistry Problem Solving" (previously "Tooli…☆19Jun 7, 2025Updated last year
- ☆18Dec 5, 2025Updated 6 months ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 4 years ago
- Code related to : O. Mendez-Lucio, M. Ahmad, E.A. del Rio-Chanona, J.K. Wegner, A Geometric Deep Learning Approach to Predict Binding Co…☆191Feb 7, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- OpenMM-based framework for absolute and relative binding free energy calculations with the Alchemical Transfer Method☆168Jun 5, 2026Updated last week
- Benchmark set for relative free energy calculations.☆121May 22, 2024Updated 2 years ago
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 10 months ago
- Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2023 (https://www.nature.com/articles/s42…☆256Jun 27, 2025Updated 11 months ago
- ChatMol☆351Mar 16, 2026Updated 3 months ago
- MBP: Multi-task Bioassay Pre-training for Protein-Ligand Binding Affinity Prediction☆21Oct 15, 2024Updated last year
- Enhancing Early Detection of Drug-Induced Liver Injury Through Predicted in vivo and in vitro Data Integration☆21Aug 15, 2025Updated 10 months ago