jiaxianyan / BioMinerLinks
A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature
☆63Updated 5 months ago
Alternatives and similar repositories for BioMiner
Users that are interested in BioMiner are comparing it to the libraries listed below
Sorting:
- ☆27Updated last year
- ☆41Updated 8 months ago
- ☆51Updated last year
- ☆39Updated last week
- Incorporation of conformational space profile into molecular representation learning, and its application to drug discovery, including vi…☆66Updated 4 months ago
- ☆61Updated 2 years ago
- ☆39Updated 6 months ago
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆103Updated 4 months ago
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆43Updated last year
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆84Updated 2 months ago
- ☆28Updated 3 years ago
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆63Updated 5 months ago
- ☆70Updated last year
- Folding-Docking-Affinity framework for protein-ligand affinity prediction☆28Updated 8 months ago
- my own studied materials and scripts☆56Updated last month
- InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…☆47Updated 2 years ago
- ☆32Updated 2 years ago
- PoseX: A Molecular Docking Benchmark☆59Updated 5 months ago
- 3D_Molecular_Generation☆101Updated last year
- Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.☆97Updated last week
- ☆40Updated 4 months ago
- Training and inference code for ShEPhERD: Diffusing shape, electrostatics, and pharmacophores for bioisosteric drug design [ICLR 2025 ora…☆83Updated last week
- This Code is for Fragment-wise 3D Structure-based Molecular Generation with Reliable Geometry☆28Updated 8 months ago
- Token-Mol 1.0：tokenized drug design with large language model☆57Updated this week
- Kinase–drug binding prediction with calibrated uncertainty quantification☆23Updated last year
- Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping☆45Updated 6 months ago
- ☆54Updated 8 months ago
- ☆25Updated last year
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆28Updated 7 months ago
- ☆110Updated 2 years ago