Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"
☆15Jun 19, 2025Updated last year
Alternatives and similar repositories for SSMuLA
Users that are interested in SSMuLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supplementary datasets and scripts for the METL manuscript☆10Sep 18, 2025Updated last year
- ☆29Dec 2, 2024Updated last year
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Sep 21, 2026Updated last month
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆10Apr 14, 2022Updated 4 years ago
- ☆19Mar 19, 2026Updated 7 months ago
- ☆13Sep 29, 2023Updated 3 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆89Oct 24, 2025Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆17Updated this week
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- MULTI-evolve: a machine learning-guided end-to-end framework for engineering hyperactive multi-mutant proteins☆90Feb 27, 2026Updated 8 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆47Aug 5, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆85Oct 27, 2021Updated 5 years ago
- ☆15Mar 28, 2025Updated last year
- ☆13Jul 28, 2026Updated 3 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Mar 6, 2024Updated 2 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆51Mar 21, 2024Updated 2 years ago
- ☆12Dec 19, 2022Updated 3 years ago
- ☆45Aug 1, 2025Updated last year
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆16Sep 27, 2022Updated 4 years ago
- ☆38Feb 4, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- Deep learning based prediction of temperature dependent enzyme turnover rates☆18Nov 24, 2024Updated last year
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated 2 years ago
- PLM based active learning model for protein engineering☆86Aug 6, 2024Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- ☆20Aug 5, 2024Updated 2 years ago
- ☆17Updated this week
- Python tools for Morse Smale Complex analysis and visualization☆14Nov 10, 2021Updated 4 years ago
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An evolutionary context-integrated deep learning framework for protein engineering☆72Jun 1, 2022Updated 4 years ago
- FusionProt: Fusing Sequence and Structural Information for Unified Protein Representation Learning☆18Dec 13, 2025Updated 10 months ago
- Statistical inference of growth-based deep mutational scanning (DMS) screens☆11Feb 27, 2026Updated 8 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆40Oct 22, 2026Updated last week
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆18Aug 9, 2024Updated 2 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 7 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 months ago