Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"
☆15Jun 19, 2025Updated last year
Alternatives and similar repositories for SSMuLA
Users that are interested in SSMuLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Dec 2, 2024Updated last year
- ☆15Mar 28, 2025Updated last year
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- ☆41Aug 1, 2025Updated 10 months ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- An R package to write Datalog queries and interact with a Datomic database☆11Aug 12, 2021Updated 4 years ago
- ☆19Aug 5, 2024Updated last year
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆79May 2, 2026Updated last month
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated last year
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆16Aug 9, 2024Updated last year
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Target prediction☆14May 8, 2020Updated 6 years ago
- ☆15Sep 18, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated 2 months ago
- Short course introducing R programming in the Tidyverse☆11Oct 22, 2024Updated last year
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 11 months ago
- Using MolE pre-trained representation to predict novel antimicrobial compounds☆11Aug 28, 2025Updated 10 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Mar 21, 2024Updated 2 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Python tools for Morse Smale Complex analysis and visualization☆14Nov 10, 2021Updated 4 years ago
- Assembly and Annotation of the Human Immune Health Atlas☆25Aug 28, 2025Updated 10 months ago
- A data science cookiecutter for Nesta projects.☆15Jun 17, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆25Dec 11, 2024Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Examples and data for performing path similarity analysis (PSA).☆18Oct 23, 2015Updated 10 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated last year
- Training material: how and why to make a research compendium☆16Mar 3, 2022Updated 4 years ago
- ☆21May 2, 2024Updated 2 years ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆69Jun 19, 2026Updated last week
- Class to view Alphafold models☆11Jan 20, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- Agent-based modelling tool for bacterial populations in systems and synthetic biology☆16Oct 18, 2021Updated 4 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆24Feb 20, 2025Updated last year
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.☆17Dec 21, 2024Updated last year
- Antibody-Specific Epitope Mapping☆19Sep 10, 2025Updated 9 months ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆16Oct 17, 2024Updated last year
- Collect paper metadata and abstract.☆16May 13, 2026Updated last month