Alternatives and similar repositories for SSMuLA

Users that are interested in SSMuLA are comparing it to the libraries listed below

• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated last month
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆117Updated 6 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆80Updated 4 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆127Updated 3 weeks ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated this week
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• jishnu-lab / SWING
  ☆29Updated 5 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆86Updated last year
• lcbc-epfl / metal-site-prediction
  ☆43Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆78Updated 3 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 4 months ago
• Fleishman-Lab / denovoKemp
  code and source data for de novo design of Kemp elimination paper
  ☆24Updated 4 months ago
• AbSciBio / igdesign
  ☆47Updated last year
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆87Updated 8 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆55Updated 9 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆36Updated 9 months ago
• idptools / finches
  FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interaction…
  ☆39Updated this week
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆22Updated 2 years ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆39Updated this week
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆49Updated last year
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆98Updated 2 years ago
• moghelab / funcfetch
  FuncFetch workflow scripts
  ☆15Updated 7 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated 2 months ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago