Zimiao1025 / BioSeq-BLM
BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models
☆13Updated 2 years ago
Alternatives and similar repositories for BioSeq-BLM:
Users that are interested in BioSeq-BLM are comparing it to the libraries listed below
- Protein language model trained on coding DNA☆46Updated 6 months ago
- ☆36Updated 3 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆35Updated last week
- ☆32Updated this week
- Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing☆17Updated 10 months ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆13Updated 11 months ago
- Biological prediction models made simple.☆41Updated 2 weeks ago
- ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.☆47Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆104Updated 7 months ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- ☆30Updated last year
- ☆46Updated 4 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- A tool for protein and protein complex structure prediction.☆27Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆32Updated 3 months ago
- ☆66Updated 7 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆63Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 7 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- FuncFetch workflow scripts☆11Updated 5 months ago
- Text-guided protein design☆47Updated 2 weeks ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆39Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆13Updated last year
- ☆38Updated 7 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 3 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆42Updated 3 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆28Updated last month
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆36Updated 7 months ago