Ligand-binding site classification with deep graph neural networks.
☆10Sep 24, 2023Updated 3 years ago
Alternatives and similar repositories for Graphsite-classifier
Users that are interested in Graphsite-classifier are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate graph representations of protein binding sites.☆10Dec 8, 2021Updated 4 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Aug 11, 2026Updated 2 months ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 3 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33Jun 25, 2026Updated 4 months ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A sample code sample to accompany the paper titled "Engineering flexible machine learning systems by traversing functionally-invariant pa…☆12Sep 2, 2024Updated 2 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆47Apr 22, 2023Updated 3 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- A curated list of awesome protein design research, software and resources.☆17May 10, 2022Updated 4 years ago
- CodeRosetta: Pushing the Boundaries of Unsupervised Code Translation for Parallel Programming☆11Nov 18, 2024Updated last year
- The SimSite3D Software tools are designed to quickly search a database of three dimensional structures, in Protein Data Bank format, with…☆11Oct 18, 2018Updated 8 years ago
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆18Nov 28, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Feb 27, 2026Updated 8 months ago
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆16Feb 26, 2025Updated last year
- Scoring alignments by embedding vector similarity☆15Jul 17, 2026Updated 3 months ago
- ☆77Feb 11, 2025Updated last year
- A Generative Adversarial Network Model Alternative to Animal Studies for Clinical Pathology Assessment☆18Jan 10, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 4 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Jun 10, 2024Updated 2 years ago
- A script that computationally designs a vaccine☆18Jan 9, 2022Updated 4 years ago
- Adaptive resampling for machine learning in single-cell biology☆14Sep 30, 2026Updated last month
- Knowledge transfer from high-resource to low-resource programming languages for Code LLMs☆17Aug 12, 2025Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆61Oct 17, 2026Updated 2 weeks ago
- Solvent Accessible Surface Areas of Biomolecules and their Complexes☆19Oct 19, 2026Updated last week
- The ProtVista tool for protein feature visualisation☆24Oct 21, 2026Updated last week
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated last year
- 2D portraits of 3D protein structures☆27May 14, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction☆17Feb 17, 2025Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- ☆15Feb 17, 2018Updated 8 years ago
- ☆26Nov 6, 2024Updated last year
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated 2 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 3 years ago