Interactive Python notebooks for PDBe API training
☆58Feb 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for pdbe-api-training
Users that are interested in pdbe-api-training are comparing it to the libraries listed below
Sorting:
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Jan 22, 2026Updated last month
- Calculation of interatomic interactions in molecular structures☆120Sep 3, 2024Updated last year
- Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz☆15Jun 14, 2024Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 3 weeks ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆39Feb 23, 2026Updated last week
- Slides + Iframe = sliFrame☆55Apr 6, 2025Updated 10 months ago
- ☆13Feb 23, 2024Updated 2 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Feb 12, 2026Updated 2 weeks ago
- A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank☆12Sep 28, 2023Updated 2 years ago
- A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆38Oct 30, 2023Updated 2 years ago
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- // PROJECT PAUSED FOR NOW (lack of capacity) // Protein cavity identification and automatic subpocket decomposition☆45Jul 23, 2023Updated 2 years ago
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- ☆19Jan 24, 2023Updated 3 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Feb 6, 2023Updated 3 years ago
- Data from the COVID Moonshot project☆20Nov 9, 2023Updated 2 years ago
- MOLeculAR structure annoTator☆33Oct 2, 2024Updated last year
- Automatic extraction of interacting compound-target pairs from ChEMBL.☆21Sep 23, 2025Updated 5 months ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated 5 months ago
- ☆55May 20, 2025Updated 9 months ago
- Mol* as anywidget☆51Oct 13, 2025Updated 4 months ago
- Contact Prediction ToolKit☆22Feb 11, 2026Updated 2 weeks ago
- Python interface for the RCSB search API.☆20Mar 20, 2024Updated last year
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆47Feb 16, 2026Updated 2 weeks ago
- Biomolecular Illustration Tool☆121Aug 17, 2024Updated last year
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆75Feb 19, 2026Updated last week
- Python interface for the RCSB PDB search API.☆65Mar 26, 2025Updated 11 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 5 years ago
- HIP: Hessians with Interatomic Potentials☆28Feb 6, 2026Updated 3 weeks ago
- This repository is the used for teaching the Physical Chemistry Practicum about Molecular Dynamics (MD) simulations for pharmacy and biol…☆12May 7, 2025Updated 9 months ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- CIF (Crystallographic Information File) support for Visual Studio Code.☆13Nov 16, 2025Updated 3 months ago
- Python implementation of 3D Zernike moments with NumPy☆15Sep 28, 2024Updated last year
- ☆11Sep 17, 2024Updated last year
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- ☆11Apr 25, 2021Updated 4 years ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated 2 weeks ago
- AlphaFind: Discover structure similarity across the entire known proteome☆24Nov 5, 2025Updated 3 months ago