Alternatives and similar repositories for MetaPlatanus

Users that are interested in MetaPlatanus are comparing it to the libraries listed below

• hcdenbakker / colorid
  Experiments with using BIGSI data structure for metagenomic and QC applications
  ☆19Updated 11 months ago
• refresh-bio / clusty
  ☆12Updated last month
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆21Updated last year
• unipept / umgap
  A taxonomic classifier for shotgun metagenomics reads
  ☆12Updated 3 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 3 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 2 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 5 months ago
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 4 years ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆39Updated last week
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…
  ☆12Updated this week
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated last year
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆15Updated 9 months ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆19Updated 5 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 2 months ago
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆12Updated 11 months ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆16Updated 6 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆23Updated last week
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆22Updated this week
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆13Updated 3 years ago
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated last year
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆11Updated this week
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆21Updated 2 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 7 months ago
• larssnip / HumGut
  A healthy human gut genome collection
  ☆22Updated last month
• fungs / taxator-tk
  A set of programs for the taxonomic analysis of genetic sequences
  ☆13Updated 2 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆31Updated 3 months ago