Przemol / seqplots
SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
☆86Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for seqplots
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆54Updated 11 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- Glimma R package☆50Updated 2 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- fastqcr: Quality Control of Sequencing Data☆68Updated last year
- DESeq2 or edgeR☆22Updated 8 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆52Updated 7 months ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Reactome Pathway Analysis☆39Updated 3 weeks ago
- R package for genomic feature analysis and visualization☆74Updated 4 years ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆40Updated 8 years ago
- ☆34Updated 8 years ago
- Differential Count Data Analysis Toolbox☆60Updated 9 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆44Updated 2 years ago
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆36Updated this week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- ☆59Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- R package wrapping bedtools☆37Updated 2 months ago
- Grid and ggplot2 based visualization for biological data☆111Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago