Przemol / seqplotsLinks
SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
☆87Updated 3 years ago
Alternatives and similar repositories for seqplots
Users that are interested in seqplots are comparing it to the libraries listed below
Sorting:
- Glimma R package☆50Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Reactome Pathway Analysis☆43Updated 5 months ago
- Analysis pipeline for cancer sequencing data☆110Updated 5 months ago
- R package for genomic feature analysis and visualization☆79Updated 5 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆43Updated 9 years ago
- Grid and ggplot2 based visualization for biological data☆116Updated last week
- Devel repository for minfi☆60Updated last year
- 2018 Bioconductor Workshops☆76Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Representation and manipulation of genomic intervals☆46Updated 2 weeks ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated last month
- Tools for visualizing genomics data☆69Updated 3 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 12 years ago
- ☆35Updated 9 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- fastqcr: Quality Control of Sequencing Data☆74Updated 2 years ago