PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
☆37Dec 28, 2022Updated 3 years ago
Alternatives and similar repositories for PETAL
Users that are interested in PETAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 21, 2025Updated last year
- Codes and datasets for the paper entitle "Predicting microRNA-disease associations from lncRNA-microRNA interactions via multi-view multi…☆11Dec 3, 2019Updated 6 years ago
- ☆10Jun 29, 2021Updated 5 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- ☆11Aug 3, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Disease pathways in the human interactome☆22Mar 20, 2018Updated 8 years ago
- Junction centric alternative splicing translator☆22May 22, 2026Updated last month
- A lightweight and flexible analysis pipeline☆12Jun 18, 2026Updated 2 weeks ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 3 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Network Visualization using both GUI and Programming☆29Jun 23, 2026Updated last week
- ☆12Feb 14, 2023Updated 3 years ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- ☆16Jun 9, 2025Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- Chemical graphical editor web application☆19Jul 31, 2022Updated 3 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Debug tool to watch objects/expressions while running an R script☆17Jul 25, 2018Updated 7 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics☆18Jan 6, 2026Updated 5 months ago
- Kaggle | 9th place (part of) solution for the Bristol-Myers Squibb – Molecular Translation challenge☆24Jun 8, 2021Updated 5 years ago
- ☆12May 24, 2022Updated 4 years ago
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- A graph visualisation tool targeted at persistent homology applications.☆12Jul 28, 2020Updated 5 years ago