Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
☆24Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for padua
Users that are interested in padua are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆85Jan 6, 2022Updated 4 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆53Updated this week
- Intro to deep learning workshop.☆11May 26, 2018Updated 8 years ago
- The Multiplierz Proteomics Library☆24Apr 27, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆32Oct 5, 2022Updated 3 years ago
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆43Aug 22, 2019Updated 6 years ago
- Newer Version can be found here: https://github.com/cschlaffner/PROTzilla☆20Apr 22, 2026Updated 2 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆45Jun 18, 2026Updated 2 weeks ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- ☆11Mar 8, 2026Updated 3 months ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆72May 7, 2024Updated 2 years ago
- A Kirby plugin to automatically syndicate (cross-post) your newly posted content to Mastodon and Bluesky.☆19May 9, 2026Updated last month
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 8 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jun 11, 2026Updated 3 weeks ago
- ☆10Aug 7, 2020Updated 5 years ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆12Apr 17, 2026Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Jun 25, 2026Updated last week
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆12Nov 12, 2021Updated 4 years ago
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Mar 10, 2025Updated last year
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- Infrastructure of AlphaX ecosystem☆54Jun 16, 2026Updated 2 weeks ago
- Particle Swarm Optimization algorithm in Python☆14Apr 23, 2024Updated 2 years ago
- ☆12Mar 1, 2025Updated last year
- ☆14Feb 11, 2020Updated 6 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jun 19, 2026Updated 2 weeks ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Democratizing ML in proteomics☆55May 6, 2026Updated last month
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Parameter estimation and model calibration using Genetic Algorithm optimization in Python.☆12Aug 16, 2024Updated last year
- MaxQuant and Perseus Bug Reporting☆10Mar 19, 2025Updated last year
- Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab☆16Dec 6, 2024Updated last year