Alternatives and similar repositories for padua

Users that are interested in padua are comparing it to the libraries listed below

• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆68Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 7 months ago
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆44Updated 3 weeks ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆22Updated 6 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 4 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆68Updated 3 weeks ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆52Updated 4 years ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆29Updated last week
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆37Updated 5 years ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆28Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆60Updated last year
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆39Updated last year
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆55Updated this week
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• PayneLab / ProteomicsEducation
  ☆40Updated 3 weeks ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 5 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆44Updated last week
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated 2 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated last month
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆83Updated 2 months ago
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated last year
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆50Updated last year