Alternatives and similar repositories for padua

Users that are interested in padua are comparing it to the libraries listed below

• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 5 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 2 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆26Updated last month
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆43Updated 3 weeks ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆51Updated 4 years ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 9 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆64Updated last week
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 4 years ago
• SchubertLab / epytope
  ☆23Updated 8 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆39Updated last year
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• PayneLab / ProteomicsEducation
  ☆36Updated 4 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated last week
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated 4 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 5 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• hart-lab / drugz
  DRUGZ software
  ☆25Updated 4 years ago
• bittremieuxlab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆47Updated 7 months ago