mfitzp / paduaLinks
Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
☆24Updated 2 years ago
Alternatives and similar repositories for padua
Users that are interested in padua are comparing it to the libraries listed below
Sorting:
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- Absolute quantification package based on quantms.io☆14Updated 2 months ago
- ☆62Updated last year
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- Python interface to amino acid properties and IEDB☆56Updated 9 months ago
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- DRUGZ software☆23Updated 3 years ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 3 years ago
- A python package for pathway visualization☆38Updated 4 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Python interface to running command-line and web-based MHC binding predictors☆97Updated 9 months ago
- bioinformatics plotting and tools☆59Updated last year
- ☆38Updated last year
- pathway and network analysis for metabolomics☆41Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆51Updated last month
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 weeks ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆36Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated last week
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- ☆33Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆41Updated 2 weeks ago
- Glycan Analysis and Glycoinformatics Library for Python☆35Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆43Updated 2 months ago