mfitzp / paduaLinks
Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
☆24Updated 2 years ago
Alternatives and similar repositories for padua
Users that are interested in padua are comparing it to the libraries listed below
Sorting:
- A Python interface to proteomics data repositories☆35Updated 5 months ago
- Absolute quantification package based on quantms.io☆16Updated last month
- ☆66Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆42Updated 2 weeks ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- DRUGZ software☆24Updated 4 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- bioinformatics plotting and tools☆59Updated last year
- Python package and command line tool for epitope prediction☆52Updated last year
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Updated last year
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- A python package for pathway visualization☆38Updated 5 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated 4 months ago
- pathway and network analysis for metabolomics☆43Updated last year
- bioinformatics visualization tools with pyviz/bokeh☆20Updated 2 years ago
- MS/MS prediction for peptides☆24Updated 4 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- A platform to do RNA science☆27Updated 4 years ago
- ☆36Updated 3 months ago
- ☆38Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated this week
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆39Updated last week