mfitzp / padua
Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
☆23Updated last year
Alternatives and similar repositories for padua:
Users that are interested in padua are comparing it to the libraries listed below
- ☆56Updated 8 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- Absolute quantification package based on quantms.io☆11Updated this week
- A Python interface to proteomics data repositories☆32Updated 8 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated this week
- MS/MS prediction for peptides☆22Updated 4 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last month
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆47Updated 3 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆15Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- Python package for investigating the structural context of PTMs☆28Updated last week
- A library for QC report based on MultiQC framework☆14Updated 2 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 8 months ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated last month
- Python package and command line tool for epitope prediction☆49Updated 5 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated 3 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated last month
- A collection of available Python tools for Proteomics analysis☆51Updated 5 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆32Updated 7 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆32Updated 4 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated last month
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 6 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)