saramasarone / enrich_omics
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
☆18Updated 6 months ago
Related projects: ⓘ
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated last month
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆28Updated last week
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆22Updated 6 months ago
- Methods for mapping genomic data onto 3D protein structure.☆27Updated 2 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆18Updated 6 years ago
- Analysis platform for large-scale dose-dependent data☆17Updated last week
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- Arnie-based DegScore tool.☆23Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆20Updated last month
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated last year
- A platform to do RNA science☆27Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆26Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆59Updated last year
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆13Updated last year
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- Deep learning model to predict degron sequences☆18Updated last year
- Python package and command line tool for epitope prediction☆48Updated last month
- ☆37Updated 3 years ago
- Spectral Framework For AI Model Evaluation☆24Updated 4 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆44Updated 3 months ago
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆28Updated last year
- ☆23Updated 4 years ago
- Comprehensive Python client for the Uniprot REST API☆43Updated last month
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆20Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆67Updated last week
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆40Updated 2 weeks ago
- ☆22Updated last year
- Package to analyze Mass Spec Data☆10Updated last year
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆15Updated this week