saramasarone / enrich_omics
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
☆19Updated 5 months ago
Alternatives and similar repositories for enrich_omics:
Users that are interested in enrich_omics are comparing it to the libraries listed below
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- ☆23Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- ☆27Updated last month
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆38Updated 2 months ago
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆35Updated 6 months ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- ☆10Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Arnie-based DegScore tool.☆25Updated 2 years ago
- Analysis platform for large-scale dose-dependent data☆25Updated 3 weeks ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆18Updated last month
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆28Updated last year
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated 11 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Functional Embedding of Gene Signatures☆43Updated last year
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 6 years ago
- ☆21Updated 2 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 10 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- ☆35Updated this week
- ☆38Updated last year