CCSB-DFCI / HuRI_paper
Code for the analyses in the human reference interactome paper.
☆26Updated last year
Related projects: ⓘ
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- ☆38Updated 9 months ago
- Knowledge-primed neural networks☆34Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆23Updated 5 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Collection of papers related to BCR repertoire analyses☆17Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆52Updated 3 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated 10 months ago
- ☆33Updated last year
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆28Updated 5 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- Deep learning model to predict degron sequences☆18Updated last year
- Inference of gene dependency from RNAi screening datasets.☆18Updated 4 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆15Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆48Updated last year
- Biological Network Integration using Convolutions☆58Updated 8 months ago
- Python package and command line tool for epitope prediction☆48Updated last month
- CMap Notebooks for LINCS 2020 Workshop☆45Updated 2 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆24Updated 5 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 6 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆22Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆32Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆45Updated 2 years ago
- predicting peptide and TCR interaction☆20Updated 3 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago