CCSB-DFCI / HuRI_paperLinks
Code for the analyses in the human reference interactome paper.
☆28Updated 2 years ago
Alternatives and similar repositories for HuRI_paper
Users that are interested in HuRI_paper are comparing it to the libraries listed below
Sorting:
- Knowledge-primed neural networks☆38Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆33Updated 2 years ago
- ☆38Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆52Updated last month
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Updated 7 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- ☆27Updated 7 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆28Updated 8 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- CMap Notebooks for LINCS 2020 Workshop☆47Updated 4 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 7 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆51Updated 4 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 4 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆42Updated last month
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 3 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 9 months ago