Alternatives and similar repositories for PyPathway

Users that are interested in PyPathway are comparing it to the libraries listed below

• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 4 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆95Updated 10 months ago
• zwang-bioinformatics / GOGO
  An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
  ☆18Updated 5 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆29Updated 8 years ago
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆47Updated 2 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 6 months ago
• hart-lab / drugz
  DRUGZ software
  ☆25Updated 4 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆51Updated 3 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆18Updated 3 years ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 4 months ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆66Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆62Updated last year
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆82Updated last year
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆122Updated 9 months ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆55Updated 2 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated 2 weeks ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 5 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆46Updated 4 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆155Updated this week
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated 2 years ago