A python package for pathway visualization
☆37Nov 11, 2020Updated 5 years ago
Alternatives and similar repositories for PyPathway
Users that are interested in PyPathway are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆25Oct 12, 2024Updated last year
- A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed b…☆10Nov 22, 2016Updated 9 years ago
- Phylogenetic profiling with orthology data☆13Oct 10, 2025Updated 5 months ago
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆12Mar 17, 2025Updated last year
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Disease pathways in the human interactome☆23Mar 20, 2018Updated 8 years ago
- Batch effects removal method based on deep autoencoder and adversarial learning☆24Dec 28, 2024Updated last year
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Access to Biological Web Services from Python.☆330Updated this week
- ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)☆19Mar 13, 2026Updated last week
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Aug 7, 2018Updated 7 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 2 years ago
- Models the Reactome knowledgebase into a interconnected graph☆20Mar 4, 2026Updated 2 weeks ago
- A curated list of awesome Molecular Modeling And Drug Discovery 🔥☆11Jul 21, 2022Updated 3 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 3 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆12Jul 11, 2018Updated 7 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 8 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆40Mar 24, 2025Updated 11 months ago
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- Curso intensivo de Python dictado para personas interesadas en trabajar en las areas de Data Analytics y Data Science☆10Nov 12, 2017Updated 8 years ago
- A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines☆17Apr 3, 2023Updated 2 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- Code for reproducing the paper "Neural Networks Fail to Learn Periodic Functions and How to Fix It" as part of the ML Reproducibility Cha…☆11Apr 16, 2021Updated 4 years ago
- Maven GUI: Metabolomics Analysis and Visualization Engine☆22Updated this week
- CORE: Automatic Molecule Optimization using Copy & Refine Strategy (AAAI 2020)☆17Jul 17, 2023Updated 2 years ago