PennChopMicrobiomeProgram / ZIBRLinks
Zero-Inflated Beta Random Effect model
☆30Updated last year
Alternatives and similar repositories for ZIBR
Users that are interested in ZIBR are comparing it to the libraries listed below
Sorting:
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆37Updated 9 years ago
- ☆43Updated 7 years ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 5 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 3 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆71Updated 3 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Species richness with high diversity☆68Updated 2 months ago
- Linear Decomposition Model☆24Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- ☆19Updated last year
- fastqcr: Quality Control of Sequencing Data☆73Updated last year
- Simple R utilities for working with HMMER☆20Updated 8 months ago
- User-Friendly R Package for Supervised Machine Learning Pipelines☆58Updated 4 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Speedy versions of phyloseq functions☆47Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- STAMPS 2018 course☆16Updated 6 years ago
- ☆27Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- ☆20Updated 5 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago