Zero-Inflated Beta Random Effect model
☆31Mar 6, 2026Updated 3 months ago
Alternatives and similar repositories for ZIBR
Users that are interested in ZIBR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms☆10Nov 30, 2014Updated 11 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Dirichlet-Multinomial Bayesian Variable Selection☆14Jun 13, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Apr 29, 2026Updated 2 months ago
- ☆17Apr 19, 2021Updated 5 years ago
- Analysis of Composition of Microbiomes☆11Jun 17, 2016Updated 10 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 9 years ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆36Jun 11, 2024Updated 2 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆135Oct 6, 2023Updated 2 years ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 11 years ago
- ☆13Dec 2, 2024Updated last year
- ☆17Dec 5, 2017Updated 8 years ago
- ☆29Jun 12, 2024Updated 2 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated 2 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 7 months ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Jun 5, 2026Updated 3 weeks ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 4 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 5 years ago
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 2 months ago
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆59Jul 9, 2024Updated last year
- Metabolomics Tools for Galaxy☆22Nov 22, 2016Updated 9 years ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- ☆21Dec 15, 2020Updated 5 years ago