jlugomar / longitudinal_microbiome_analysis_publicLinks
☆17Updated 4 years ago
Alternatives and similar repositories for longitudinal_microbiome_analysis_public
Users that are interested in longitudinal_microbiome_analysis_public are comparing it to the libraries listed below
Sorting:
- ☆74Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- ☆12Updated last year
- ☆15Updated 2 years ago
- ☆37Updated last year
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆35Updated 6 months ago
- ☆14Updated 3 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- gutSMASH☆55Updated 3 weeks ago
- metabolic heatmap☆21Updated 6 years ago
- ☆24Updated 5 years ago
- ☆20Updated 4 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- ☆18Updated 2 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- Neural networks for microbe-metabolite interaction analysis☆125Updated 2 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 3 years ago
- Deep representation learning for disease prediction based on microbiome data☆61Updated 2 years ago
- ☆21Updated 4 years ago
- ☆31Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago