jlugomar / longitudinal_microbiome_analysis_publicLinks
☆17Updated 4 years ago
Alternatives and similar repositories for longitudinal_microbiome_analysis_public
Users that are interested in longitudinal_microbiome_analysis_public are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆74Updated 9 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆34Updated last month
- ☆37Updated last year
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 2 years ago
- ☆14Updated 3 years ago
- A manually curated database of human gut metabolic modules.☆18Updated 7 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆30Updated 3 months ago
- ☆26Updated 4 years ago
- ☆12Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- ☆31Updated 4 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- Sample Metadata Curation for curatedMetagenomicData☆29Updated 2 weeks ago
- Interactive tutorials for using scikit-bio in biological research☆26Updated 3 weeks ago
- ☆24Updated 5 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- ☆11Updated 6 years ago
- metabolic heatmap☆20Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 6 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 3 months ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Updated 5 years ago
- ☆15Updated 8 months ago
- ☆19Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- gutSMASH☆55Updated 7 months ago
- ☆15Updated last year