jlugomar / longitudinal_microbiome_analysis_publicLinks
☆17Updated 4 years ago
Alternatives and similar repositories for longitudinal_microbiome_analysis_public
Users that are interested in longitudinal_microbiome_analysis_public are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆14Updated 3 years ago
- ☆75Updated 11 months ago
- ☆37Updated last year
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- ☆25Updated 4 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- ☆12Updated last year
- ☆24Updated 5 years ago
- ☆20Updated 4 years ago
- ☆31Updated 4 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 5 months ago
- ☆15Updated last year
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆34Updated 5 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- A continually expanding collection of microbiome analysis tools☆18Updated 3 years ago
- metabolic heatmap☆21Updated 6 years ago
- ☆18Updated 2 years ago
- Deep representation learning for disease prediction based on microbiome data☆60Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- gutSMASH☆55Updated 9 months ago
- Neural networks for microbe-metabolite interaction analysis☆124Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Gene Co-expression Network analysis pipeline☆25Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆33Updated 2 years ago
- ☆12Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated last month