☆18Feb 19, 2021Updated 5 years ago
Alternatives and similar repositories for longitudinal_microbiome_analysis_public
Users that are interested in longitudinal_microbiome_analysis_public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14May 7, 2022Updated 3 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 2 months ago
- ☆14Jan 27, 2026Updated 2 months ago
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Nov 25, 2025Updated 4 months ago
- OHMI: The Ontology of Host-Microbiome Interactions☆12Mar 22, 2026Updated last week
- R package for joint species distribution models☆14Nov 3, 2025Updated 4 months ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated last month
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Points of Significance: Modeling infectious epidemics☆12Oct 31, 2024Updated last year
- ☆14Apr 4, 2023Updated 2 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 3 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- ☆22Nov 6, 2020Updated 5 years ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- Real time monitor for snakemake☆17Mar 19, 2026Updated last week
- pySCM: The Set Covering Machine in Python☆14Apr 18, 2025Updated 11 months ago
- ☆19Feb 5, 2025Updated last year
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PanGenomePipeline☆16Apr 10, 2024Updated last year
- ☆16Aug 1, 2022Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆39Mar 22, 2022Updated 4 years ago
- ☆18Jun 11, 2024Updated last year
- ☆12Apr 6, 2021Updated 4 years ago
- Advanced Cleaning Techniques with Python☆18Aug 18, 2019Updated 6 years ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 3 weeks ago
- Wide and Deep Neural Net for predicting TB resistance from genotypic data☆14Dec 9, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Transfer Learning-enabled context-aware microbial source tracking☆15Oct 4, 2022Updated 3 years ago
- preprocessing scripts for diffusion imaging☆10Sep 6, 2019Updated 6 years ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 5 years ago
- Nonlinear Causal Discovery with Confounders☆21Feb 9, 2023Updated 3 years ago
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- PathIntegrate Python package for pathway-based multi-omics data integration☆18Nov 9, 2024Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago