jlugomar / longitudinal_microbiome_analysis_publicLinks
☆17Updated 4 years ago
Alternatives and similar repositories for longitudinal_microbiome_analysis_public
Users that are interested in longitudinal_microbiome_analysis_public are comparing it to the libraries listed below
Sorting:
- A manually curated database of human gut metabolic modules.☆18Updated 6 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆14Updated 3 years ago
- ☆73Updated 9 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- ☆20Updated 4 years ago
- ☆12Updated last year
- ☆37Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- ☆18Updated 2 years ago
- Gene Co-expression Network analysis pipeline☆25Updated 2 years ago
- ☆21Updated 4 years ago
- ☆15Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆30Updated 2 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- ☆12Updated 7 years ago
- ☆27Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- gutSMASH☆55Updated 6 months ago
- ☆23Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Updated 5 years ago
- ☆31Updated 4 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- ☆11Updated 6 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆28Updated 3 months ago