jlugomar / longitudinal_microbiome_analysis_publicLinks
☆17Updated 4 years ago
Alternatives and similar repositories for longitudinal_microbiome_analysis_public
Users that are interested in longitudinal_microbiome_analysis_public are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆36Updated 7 months ago
- ☆38Updated last year
- ☆76Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- gutSMASH☆55Updated 2 months ago
- ☆21Updated 5 years ago
- ☆24Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆20Updated last month
- ☆14Updated 3 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- ☆13Updated last year
- ☆33Updated 5 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 4 years ago
- a novel encoding method for viral identification in metagenomics☆15Updated 2 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- ☆10Updated 6 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- Profiler for metagenomics based on NGLess☆13Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- Neural networks for microbe-metabolite interaction analysis☆125Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- ☆31Updated 4 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago