thibautjombart / treescape
Exploring tree diversity
☆14Updated 8 years ago
Alternatives and similar repositories for treescape:
Users that are interested in treescape are comparing it to the libraries listed below
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- ☆18Updated 9 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last week
- ☆16Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- A book for teaching people how to do comparative methods in R☆20Updated last year
- population genetic simulations with R and Shiny☆27Updated 6 months ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 9 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 10 months ago
- Reproducible Phylogenomics☆22Updated 8 years ago
- R We There Yet?☆30Updated last month
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- initial commit☆26Updated 2 years ago
- babette is an R package to work with BEAST2☆45Updated last week
- Ebola virus surveillance☆16Updated 8 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Updated 6 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated last year
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Updated last year
- R/Shiny application for viewing microbial community data☆19Updated 4 years ago
- An R-wrapper for lsd2☆9Updated 2 years ago
- ☆9Updated 2 years ago
- ☆19Updated 10 months ago
- ☆17Updated 3 weeks ago
- R package to run BEAST2☆11Updated last week
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆12Updated last year
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆25Updated 7 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated 3 months ago
- ☆10Updated last month