We assembled a compendium dataset of mass-spectrometry-based proteomics data of 2002 primary tumors from 14 cancer types and 17 studies
☆18Feb 4, 2022Updated 4 years ago
Alternatives and similar repositories for cancer-proteomics-compendium-n2002
Users that are interested in cancer-proteomics-compendium-n2002 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Feb 18, 2021Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆11Sep 16, 2022Updated 3 years ago
- ☆45May 23, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 7 months ago
- Code for ST_IGI package☆35Jul 10, 2025Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆20Apr 30, 2022Updated 4 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- 在R语言中使用ChatGPT(中国大陆版)☆11Mar 17, 2023Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆35Dec 29, 2020Updated 5 years ago
- ☆21Dec 23, 2024Updated last year
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Jan 21, 2023Updated 3 years ago
- ☆76Aug 16, 2022Updated 3 years ago
- ☆23Nov 9, 2023Updated 2 years ago
- FOR my learing☆12Feb 19, 2026Updated 5 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated 2 years ago
- Multi-omics analysis protocols by Lyu.☆53Aug 22, 2023Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 4 months ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Jun 27, 2020Updated 6 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Jan 14, 2021Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆12Mar 5, 2024Updated 2 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- ☆14Mar 26, 2024Updated 2 years ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated 2 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- ☆14Feb 11, 2020Updated 6 years ago
- ☆15Mar 2, 2023Updated 3 years ago
- Perceptron model built from scratch.☆17Jul 8, 2018Updated 8 years ago
- ☆11Feb 18, 2021Updated 5 years ago