mhoopmann / mstoolkit

Related projects ⓘ

Alternatives and complementary repositories for mstoolkit

• mhoopmann / kojak
  Automatically exported from code.google.com/p/kojak-ms
  ☆12Updated this week
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• IFIproteomics / LFQbench
  ☆24Updated last year
• statisticalbiotechnology / diffacto
  ☆13Updated 8 months ago
• abdrakhimov1 / Biosaur
  ☆14Updated 2 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated last week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆34Updated this week
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆14Updated 2 months ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆19Updated this week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆43Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆44Updated last month
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆38Updated this week
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆10Updated last month
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆22Updated last month
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 4 months ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆77Updated 7 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 3 years ago
• MatteoLacki / timspy
  ☆17Updated 3 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated 2 months ago
• fickludd / dinosaur
  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
  ☆42Updated 2 years ago
• gtluu / timsconvert
  ☆32Updated last month
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆44Updated last month
• compomics / spectrum_similarity
  Scoring functions to compare MS/MS spectra
  ☆11Updated 7 years ago
• UWPR / Lorikeet
  Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.
  ☆17Updated last year
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆57Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 10 months ago
• cctsou / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆10Updated 8 years ago