Alternatives and similar repositories for pmd

Users that are interested in pmd are comparing it to the libraries listed below

• stanstrup / QC4Metabolomics
  QC systems for metabolomics studies
  ☆10Updated this week
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆19Updated last year
• WMBEdmands / compMS2Miner
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆15Updated 8 years ago
• gggraca / MetaboAnnotatoR
  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets
  ☆13Updated this week
• danielatrivella / NP3_MS_Workflow
  A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis
  ☆13Updated last month
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆20Updated last year
• kruvelab / MS2Tox
  MS2Tox is a machine learning tool for predicting ecotoxicity of unidentified chemicals in water by nontarget LC/HRMS
  ☆16Updated 2 months ago
• KujawinskiLaboratory / Autotuner
  This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…
  ☆16Updated 4 years ago
• rformassspectrometry / MetaboAnnotation
  High level functionality to support and simplify metabolomics data annotation.
  ☆16Updated 3 months ago
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated last year
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆17Updated 5 months ago
• idslme / IDSL.IPA
  Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…
  ☆14Updated 2 years ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Updated 2 years ago
• zhengfj1994 / MRM-Ion_Pair_Finder
  Defined MRM transitions from untargeted metabolomics data
  ☆10Updated last year
• eugenemel / maven
  Maven GUI: Metabolomics Analysis and Visualization Engine
  ☆20Updated this week
• yufree / xcmsrocker
  Rocker image for metabolomics data analysis
  ☆13Updated 3 months ago
• aberHRML / metabolighteR
  R Interface to the Metabolights REST API
  ☆11Updated 3 weeks ago
• yguitton / metaMS
  data processing for MS-based metabolomics
  ☆15Updated 10 months ago
• ZhuMetLab / MetImage
  Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis
  ☆12Updated 2 years ago
• yufree / enviGCMS
  GC/LC-MS data analysis for environmental science
  ☆17Updated 3 months ago
• CSi-Studio / MetaPro
  metabolomics data analysis platform
  ☆21Updated 2 years ago
• phenomecentre / peakPantheR
  On-instrument and post-acquisition targeted feature extraction
  ☆12Updated last year
• computational-chemical-biology / ChemWalker
  ☆11Updated last year
• computational-metabolomics / structToolbox
  R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…
  ☆10Updated 3 months ago
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago
• wilsontom / msconverteR
  Create .mzML files through the R Console
  ☆11Updated 3 weeks ago
• WandeRum / MVI-evaluation
  Missing value imputation and evaluation, especially for metabolomics data sets
  ☆18Updated 7 years ago
• secimTools / SECIMTools
  A set of metabolomics tools for use in Galaxy
  ☆11Updated 3 years ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 3 years ago