Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis
☆11May 6, 2025Updated 9 months ago
Alternatives and similar repositories for pmd
Users that are interested in pmd are comparing it to the libraries listed below
Sorting:
- GC/LC-MS data analysis for environmental science☆17May 20, 2025Updated 9 months ago
- MS2Tox is a machine learning tool for predicting ecotoxicity of unidentified chemicals in water by nontarget LC/HRMS☆16Jan 8, 2026Updated last month
- Mass spectral library manager☆13Apr 9, 2020Updated 5 years ago
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Feb 12, 2026Updated 2 weeks ago
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Sep 24, 2022Updated 3 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- ☆15Jun 3, 2021Updated 4 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- ☆16Jul 20, 2022Updated 3 years ago
- The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.☆25Aug 8, 2025Updated 6 months ago
- ☆24Feb 24, 2026Updated last week
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- A collection of common mz values found in mass spectrometry.☆20Jun 13, 2024Updated last year
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated 8 months ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 4 years ago
- PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.☆22Jan 20, 2026Updated last month
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Apr 25, 2025Updated 10 months ago
- R Interface to the Metabolights REST API☆11Aug 19, 2025Updated 6 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Updated this week
- OpenBabel wrapper package for R☆10Feb 17, 2026Updated 2 weeks ago
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- On-instrument and post-acquisition targeted feature extraction☆13Sep 27, 2025Updated 5 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Feb 21, 2026Updated last week
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 8 months ago
- Convert MSP files into a database☆10May 4, 2021Updated 4 years ago
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆46Dec 15, 2025Updated 2 months ago
- Annotation of in source LC/MS data☆12Oct 19, 2024Updated last year
- This package is a python warpper for CFM-ID☆13Aug 26, 2022Updated 3 years ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 5 months ago
- ☆14Feb 4, 2026Updated 3 weeks ago
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated last month
- This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Uni…☆17Nov 2, 2020Updated 5 years ago
- ☆28Nov 30, 2023Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆31Jan 5, 2025Updated last year