A set of metabolomics tools for use in Galaxy
☆11Sep 2, 2022Updated 3 years ago
Alternatives and similar repositories for SECIMTools
Users that are interested in SECIMTools are comparing it to the libraries listed below
Sorting:
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 6 years ago
- ☆11Feb 20, 2026Updated last month
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- Metabolomics Tools for Galaxy☆21Nov 22, 2016Updated 9 years ago
- ☆15Oct 4, 2021Updated 4 years ago
- ☆55Apr 15, 2021Updated 4 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- Realtime quality control for mass spectrometry data acquisition☆21Mar 5, 2026Updated 2 weeks ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- ☆16Jul 20, 2022Updated 3 years ago
- R Interface to the ClassyFire REST API☆12Feb 21, 2025Updated last year
- pathway and network analysis for metabolomics☆43Dec 8, 2025Updated 3 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Mar 10, 2026Updated last week
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Feb 28, 2026Updated 2 weeks ago
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- Metabolomics And Dereplication By Two-dimensional Experiments - MADByTE NMR Metabolomics Platform☆12Jul 23, 2025Updated 7 months ago
- metabolomics data analysis platform☆20Apr 21, 2023Updated 2 years ago
- Galaxy Tools for Computational Chemistry☆16Mar 25, 2025Updated 11 months ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 6 months ago
- asari, metabolomics data preprocessing☆60Updated this week
- Workflow4Metabolomics meta repository☆11May 23, 2025Updated 9 months ago
- High level functionality to support and simplify metabolomics data annotation.☆20Mar 2, 2026Updated 2 weeks ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- Handy command line utility for Galaxy administrators☆24Sep 15, 2025Updated 6 months ago
- G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics☆17Mar 9, 2024Updated 2 years ago
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Mar 21, 2024Updated last year
- Set of Galaxy tool wrappers developed at RECETOX☆13Mar 11, 2026Updated last week
- Code associated with the manuscript: Deep Neural Networks for Classification of LC-MS Spectral Peaks☆14Jan 11, 2021Updated 5 years ago
- List of tools included in https://usegalaxy.eu☆34Updated this week
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28May 25, 2023Updated 2 years ago
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19May 12, 2023Updated 2 years ago
- ☆28Nov 30, 2023Updated 2 years ago
- Python programming workshop for bioinformatics☆10Jul 13, 2021Updated 4 years ago
- Notebooks in computational metabolomics☆15Feb 3, 2025Updated last year
- Calculation and visualization of molecular networks based on t-SNE algorithm☆36Jan 29, 2025Updated last year
- CANOPUS visualization for Jupyter notebook☆20Mar 9, 2022Updated 4 years ago
- Maven GUI: Metabolomics Analysis and Visualization Engine☆22Updated this week
- On-instrument and post-acquisition targeted feature extraction☆13Sep 27, 2025Updated 5 months ago