A set of metabolomics tools for use in Galaxy
☆11Sep 2, 2022Updated 3 years ago
Alternatives and similar repositories for SECIMTools
Users that are interested in SECIMTools are comparing it to the libraries listed below
Sorting:
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Jan 30, 2026Updated 3 weeks ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- metabolomics data analysis platform☆20Apr 21, 2023Updated 2 years ago
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 5 months ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 5 years ago
- Metabolomics Tools for Galaxy☆21Nov 22, 2016Updated 9 years ago
- ☆11Feb 20, 2026Updated last week
- R Interface to the ClassyFire REST API☆12Feb 21, 2025Updated last year
- pathway and network analysis for metabolomics☆43Dec 8, 2025Updated 2 months ago
- ☆55Apr 15, 2021Updated 4 years ago
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17May 8, 2024Updated last year
- High level functionality to support and simplify metabolomics data annotation.☆19Feb 5, 2026Updated 3 weeks ago
- asari, metabolomics data preprocessing☆59Jan 29, 2026Updated 3 weeks ago
- Realtime quality control for mass spectrometry data acquisition☆21Nov 17, 2025Updated 3 months ago
- G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics☆17Mar 9, 2024Updated last year
- ☆15Oct 4, 2021Updated 4 years ago
- ☆16Jul 20, 2022Updated 3 years ago
- Maven GUI: Metabolomics Analysis and Visualization Engine☆22Feb 21, 2026Updated last week
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19May 12, 2023Updated 2 years ago
- A collection of common mz values found in mass spectrometry.☆20Jun 13, 2024Updated last year
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Mar 21, 2024Updated last year
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Apr 25, 2025Updated 10 months ago
- PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.☆22Jan 20, 2026Updated last month
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- On-instrument and post-acquisition targeted feature extraction☆13Sep 27, 2025Updated 5 months ago
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆11May 6, 2025Updated 9 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Updated this week
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Jan 20, 2026Updated last month
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- C++ lossless and lossy mass spectrometry compression☆13Sep 16, 2021Updated 4 years ago
- Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis☆12Apr 13, 2023Updated 2 years ago
- Notebooks in computational metabolomics☆15Feb 3, 2025Updated last year
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- ☆28Nov 30, 2023Updated 2 years ago