Quickly find and score consensus between metabolite identifications and gene annotations
☆19Nov 10, 2025Updated 11 months ago
Alternatives and similar repositories for magi
Users that are interested in magi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- ☆15Jun 3, 2021Updated 5 years ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆36Jun 13, 2026Updated 4 months ago
- Mass Spec Query Language (MassQL) support for Spectra☆10Apr 30, 2026Updated 6 months ago
- Client-side proxy service for connecting a workstation to CBorg API Services☆14Oct 21, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Sep 29, 2020Updated 6 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- Relaunch of the initial MetFrag project.☆20Mar 9, 2026Updated 7 months ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 3 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 5 years ago
- ☆12Feb 20, 2026Updated 8 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29May 15, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Oct 7, 2026Updated 3 weeks ago
- ☆13Oct 11, 2026Updated 2 weeks ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 5 years ago
- Defined MRM transitions from untargeted metabolomics data☆12Nov 13, 2023Updated 2 years ago
- ☆11May 2, 2022Updated 4 years ago
- ☆16May 27, 2026Updated 5 months ago
- Mass spectral library manager☆14Apr 9, 2020Updated 6 years ago
- Dash HoloViews Example using Datashader and Linked Selections on the NYC Taxi Dataset☆14Dec 8, 2021Updated 4 years ago
- ☆28Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jan 16, 2025Updated last year
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 4 months ago
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- Python Data Science package for HeavyDB.☆22Sep 3, 2026Updated last month
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆28Aug 14, 2026Updated 2 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆84Jun 5, 2024Updated 2 years ago
- Curated list on Deep Transformers Applications on Biology and Chemistry☆20Apr 8, 2023Updated 3 years ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 3 years ago
- ☆19Jul 20, 2026Updated 3 months ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆58Apr 23, 2026Updated 6 months ago
- Rocker image for metabolomics data analysis☆14Oct 23, 2026Updated last week
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 6 months ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆17Oct 22, 2026Updated last week
- Nascent Transcription Processing Pipeline☆25Updated this week