Quickly find and score consensus between metabolite identifications and gene annotations
☆18Nov 10, 2025Updated 7 months ago
Alternatives and similar repositories for magi
Users that are interested in magi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- ☆15Jun 3, 2021Updated 5 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- Relaunch of the initial MetFrag project.☆19Mar 9, 2026Updated 3 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- ☆12Feb 20, 2026Updated 4 months ago
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 4 years ago
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆17May 22, 2026Updated last month
- Take command of your set enrichment analyses.☆23Updated this week
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- Code in Clustering Review Ronan et al. 2016☆13Mar 10, 2016Updated 10 years ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆36Jun 13, 2026Updated 2 weeks ago
- ☆16May 27, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 4 years ago
- Python Data Science package for HeavyDB.☆22Updated this week
- ☆11May 2, 2022Updated 4 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 3 weeks ago
- Rocker image for metabolomics data analysis☆13Oct 25, 2025Updated 8 months ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Curated list on Deep Transformers Applications on Biology and Chemistry☆19Apr 8, 2023Updated 3 years ago
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 2 months ago
- A brief introduction to the engaging cluster for the NSE and PSFC groups. Assorted recipes and gists.☆19Jan 29, 2022Updated 4 years ago
- ☆20Jul 12, 2023Updated 2 years ago
- single-cell decorrelated module networks☆33Aug 24, 2024Updated last year
- ☆16Jul 20, 2022Updated 3 years ago
- Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.☆17Feb 13, 2026Updated 4 months ago
- ☆23Dec 23, 2021Updated 4 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated 11 months ago
- ☆23Aug 28, 2020Updated 5 years ago
- A registry of Knowledge Graphs, their data sources, and the ways they fit together.☆27Jun 23, 2026Updated last week
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated 2 years ago
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆20Oct 23, 2025Updated 8 months ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- A very simple DDP client for ruby.☆25Feb 24, 2014Updated 12 years ago