Genentech / BRAIDLinks
BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
☆207Updated last month
Alternatives and similar repositories for BRAID
Users that are interested in BRAID are comparing it to the libraries listed below
Sorting:
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- A visible neural network model for drug response prediction☆144Updated last year
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆80Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆55Updated 3 years ago
- ☆76Updated last year
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆42Updated last month
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆141Updated this week
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- Mapping DEGs to PPI Networks, Identifying Network Hubs and Highly Connected Proteins, and Simulating Genetic Circuits. An End-to-End DIY …☆24Updated 6 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆147Updated last week
- Peptide-MHC I binding affinity prediction☆211Updated 2 months ago
- ☆37Updated 6 months ago
- A list of tools on proteomics using deep learning☆97Updated last year
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terra☆119Updated this week
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆58Updated 6 years ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- ☆89Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆185Updated last month
- Deep learning framework for proteomics☆129Updated 3 weeks ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Biological sequence analysis for the modern age.☆231Updated 2 weeks ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆77Updated last week
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆302Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 4 months ago
- An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology☆263Updated last year