physics-informed neural network based method for solving single-cell population dynamics
☆18Sep 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for pseudodynamics_plus
Users that are interested in pseudodynamics_plus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- ☆26Jul 15, 2026Updated 2 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Updated this week
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆19Jun 30, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- DeepRUOTv2 (Dynamical Optimal Transport Tools)☆24Dec 10, 2025Updated 9 months ago
- ☆22May 12, 2026Updated 4 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 10 months ago
- ☆22Sep 8, 2023Updated 3 years ago
- LoRA finetuned LLM for single cell genomics research☆31Jun 30, 2026Updated 3 months ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- ☆54May 18, 2026Updated 4 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Transformer Based Embeddings of Wasserstein Distance☆27Feb 18, 2026Updated 7 months ago
- Learn single-cell dynamics using neural differential equations☆72Aug 18, 2026Updated last month
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 8 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- Universal Single-Cell Genomics Preprocessing package☆53Sep 15, 2026Updated 3 weeks ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 9 months ago
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 3 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- inferring regulatory cellular dynamics☆195Sep 24, 2026Updated 2 weeks ago
- A database of useful gene signatures for single-cell analysis☆30May 19, 2025Updated last year
- Benchmarking pipeline for single-cell perturbation prediction tools☆38Jul 11, 2025Updated last year
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 8 months ago
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆20Dec 29, 2025Updated 9 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 9 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 5 months ago
- Flow-based model for learning non-gradient field dynamics☆27Jul 3, 2026Updated 3 months ago
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆37Dec 10, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Oct 22, 2025Updated 11 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆24Feb 4, 2024Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- Toolbox of the Human Neural Organoid Cell Atlas☆35Updated this week
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago