Covid-19 epidemiology - data and analysis
☆11Dec 7, 2023Updated 2 years ago
Alternatives and similar repositories for Covid-19
Users that are interested in Covid-19 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆17Nov 1, 2021Updated 4 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Dec 22, 2021Updated 4 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 4 years ago
- ☆20Apr 9, 2021Updated 5 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17May 9, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated 2 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- CRAN Task View: Epidemiology☆23Mar 17, 2026Updated last month
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 6 months ago
- A collection of htmlwidgets handy for epidemiology, etc.☆13Jul 5, 2015Updated 10 years ago
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 4 months ago
- ☆27Feb 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Sep 10, 2024Updated last year
- A Bayesian spatio-temporal interaction model for epidemiology.☆25Oct 28, 2019Updated 6 years ago
- Monte-Carlo State Space Models☆19Jul 1, 2024Updated last year
- ☆29Jul 9, 2025Updated 9 months ago
- Helix® COVID-19 Surveillance☆16Apr 10, 2025Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 3 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆20Sep 12, 2025Updated 7 months ago
- Small Helpers and Tricks for Epidemics Analysis☆11Sep 20, 2023Updated 2 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- Applied category theory applied to epidemiological models☆12Aug 7, 2024Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- ☆10Sep 30, 2025Updated 6 months ago
- Shiny app to infer caes from new deaths of COVID-19☆11Mar 30, 2020Updated 6 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 3 years ago
- R Package - Dynamical Systems Approach to Infectious Disease Epidemiology☆26Jan 22, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Material for advanced epidemiology module in MPH☆13Updated this week
- Compile Stan models to WebAssembly.☆15May 14, 2023Updated 2 years ago
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 3 years ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Oct 30, 2023Updated 2 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 4 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 2 years ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago