A web platform to detect and analyze variants of SARS-CoV-2
☆61Aug 25, 2026Updated last week
Alternatives and similar repositories for cov-spectrum-website
Users that are interested in cov-spectrum-website are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆33Updated this week
- Tools for evolutionary forecasting☆14Jun 19, 2026Updated 2 months ago
- RhyDB – High-performance analytical database for sequence alignment data☆19Updated this week
- An open-source software package to power microbial genomic databases☆74Updated this week
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆35Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Repository to propose and discuss lineages☆54Updated this week
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 8 months ago
- The data API server for outbreak.info☆11Jan 27, 2025Updated last year
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Aug 5, 2026Updated 3 weeks ago
- ☆10May 28, 2023Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Jun 1, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆58Updated this week
- Pyro models of SARS-CoV-2 variants☆80Jul 26, 2024Updated 2 years ago
- Descriptive summaries of covid data for Belgium☆10Apr 23, 2021Updated 5 years ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated last year
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆262Aug 19, 2026Updated 2 weeks ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.☆325Aug 15, 2026Updated 2 weeks ago
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Jan 25, 2022Updated 4 years ago
- Bioinformatics Pipeline and Visualization resources☆67Aug 30, 2024Updated 2 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Repository for suggesting new lineages that should be added to the current scheme☆1,076Aug 27, 2026Updated last week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆33Aug 17, 2026Updated 2 weeks ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago
- ☆13Aug 20, 2025Updated last year
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- ☆27Feb 25, 2021Updated 5 years ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 3 years ago
- Distance-based Phylogenetic Placer☆23Jul 13, 2026Updated last month
- SIR, SEIR, and beyond☆10Jul 6, 2023Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago