GenSpectrum / cov-spectrum-websiteLinks
A web platform to detect and analyze variants of SARS-CoV-2
☆60Updated this week
Alternatives and similar repositories for cov-spectrum-website
Users that are interested in cov-spectrum-website are comparing it to the libraries listed below
Sorting:
- An open database of vertebrate-virus interactions☆41Updated last month
- Nextstrain build for mpox virus☆50Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated last week
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- A tool for exploring large trees in the browser☆117Updated last week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆35Updated this week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated 2 weeks ago
- ☆74Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆85Updated last year
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Tutorial on Bayesian phylogenetic analysis☆47Updated 8 years ago
- Scalable relaxed clock phylogenetic dating☆26Updated last month
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Phylogenetic tree library for JavaScript/Node.js☆36Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 4 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 8 years ago
- Local Lineage and Monophyly Assessment☆16Updated 4 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last month
- PhyDyn: Epidemiological modelling in BEAST☆21Updated 2 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆109Updated 2 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated last month
- R Data Exploration for Serratus☆15Updated 2 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 6 months ago