GenSpectrum / cov-spectrum-website
A web platform to detect and analyze variants of SARS-CoV-2
☆61Updated this week
Alternatives and similar repositories for cov-spectrum-website:
Users that are interested in cov-spectrum-website are comparing it to the libraries listed below
- ☆48Updated 2 years ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆30Updated last week
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆96Updated 4 months ago
- Nextstrain build for mpox virus☆45Updated this week
- SARS-Cov-2 Recombinant Finder for fasta sequences☆48Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆124Updated 2 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated this week
- Utility to alias and dealias pango lineages☆22Updated last year
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆36Updated last week
- Programmatically interact with the GISAID database.☆72Updated 4 months ago
- A tool for exploring large trees in the browser☆105Updated last week
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆28Updated this week
- ☆13Updated 2 years ago
- ☆15Updated last week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆61Updated last year
- Datasets for https://github.com/nextstrain/nextclade☆32Updated last week
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆13Updated last year
- ☆74Updated last year
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆38Updated last year
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆47Updated 2 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆104Updated this week
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated 2 months ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated last year
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago