GenSpectrum / cov-spectrum-websiteLinks
A web platform to detect and analyze variants of SARS-CoV-2
☆60Updated this week
Alternatives and similar repositories for cov-spectrum-website
Users that are interested in cov-spectrum-website are comparing it to the libraries listed below
Sorting:
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- A tool for exploring large trees in the browser☆115Updated 2 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated last month
- ☆74Updated last year
- An open database of vertebrate-virus interactions☆41Updated 3 weeks ago
- Nextstrain build for mpox virus☆50Updated last week
- Global phylogenies of SARS-CoV-2 sequences☆85Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆49Updated 3 years ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆37Updated 4 years ago
- SARS-CoV-2 genomics☆16Updated 3 months ago
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- The data API server for outbreak.info☆11Updated 7 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated last week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆35Updated 3 weeks ago
- Tutorial on Bayesian phylogenetic analysis☆47Updated 8 years ago
- ☆49Updated 3 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- Estimating time trees from very large phylogenies☆27Updated last year
- Scalable relaxed clock phylogenetic dating☆25Updated 3 weeks ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated 2 weeks ago
- Racmacs R package for performing antigenic cartography☆23Updated last year
- Reconstruction of transmission trees using genomic data☆63Updated last year
- ☆14Updated this week
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 3 months ago
- Calculate distances between phylogenetic trees in R☆33Updated this week
- SARS-CoV-2 genome data analysis☆10Updated this week