GenSpectrum / cov-spectrum-websiteLinks
A web platform to detect and analyze variants of SARS-CoV-2
☆60Updated 2 weeks ago
Alternatives and similar repositories for cov-spectrum-website
Users that are interested in cov-spectrum-website are comparing it to the libraries listed below
Sorting:
- A tool for exploring large trees in the browser☆119Updated 3 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Nextstrain build for mpox virus☆50Updated this week
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- ☆74Updated last year
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated last week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Updated 3 years ago
- ☆17Updated this week
- Data and scripts for Zika virus tutorial☆10Updated 2 months ago
- An open database of vertebrate-virus interactions☆41Updated 3 weeks ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Calculate distances between phylogenetic trees in R☆35Updated this week
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆115Updated 2 weeks ago
- Utility to alias and dealias pango lineages☆23Updated 2 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 8 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated this week
- Reconstruction of transmission trees using genomic data☆71Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆138Updated 2 weeks ago
- ☆50Updated 3 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated last month
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Nextstrain build for avian influenza viruses☆27Updated last week
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Programmatically interact with the GISAID database.☆80Updated 5 months ago
- A statically generated catalog of available Snakemake workflows☆36Updated this week
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Updated last month
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 6 months ago