sars-cov-2-variants / lineage-proposalsLinks
Repository to propose and discuss lineages
☆50Updated last week
Alternatives and similar repositories for lineage-proposals
Users that are interested in lineage-proposals are comparing it to the libraries listed below
Sorting:
- Informal summaries of notable SARS-CoV-2 lineages☆110Updated 3 weeks ago
- ☆11Updated 10 months ago
- Results from a model of global SARS-CoV-2 lineage competition☆39Updated last month
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last week
- Datasets for https://github.com/nextstrain/nextclade☆35Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆435Updated last week
- ☆49Updated 3 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆236Updated last week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆32Updated last week
- ARTIC SARS-CoV-2 workflow and reporting☆51Updated 2 months ago
- ☆74Updated last year
- Nextstrain build for mpox virus☆48Updated this week
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆54Updated last week
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated 2 years ago
- Consensus sequences for each Pango lineage☆22Updated this week
- Programmatically interact with the GISAID database.☆76Updated 2 months ago
- Depth-weighted De-Mixing☆115Updated this week
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆15Updated last week
- A web platform to detect and analyze variants of SARS-CoV-2☆61Updated this week
- Utility to alias and dealias pango lineages☆22Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Influenza data pipeline to automate genotyping assignment☆35Updated 3 weeks ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆29Updated last year
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆35Updated 2 months ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 9 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆105Updated 2 weeks ago
- International SARS-CoV-2 surveillance☆36Updated 2 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆110Updated last week
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated 2 months ago