sars-cov-2-variants / lineage-proposalsLinks
Repository to propose and discuss lineages
☆51Updated this week
Alternatives and similar repositories for lineage-proposals
Users that are interested in lineage-proposals are comparing it to the libraries listed below
Sorting:
- Informal summaries of notable SARS-CoV-2 lineages☆110Updated last month
- ☆11Updated last year
- Datasets for https://github.com/nextstrain/nextclade☆39Updated this week
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆134Updated 3 weeks ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆444Updated last month
- Nextstrain build for mpox virus☆50Updated this week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated last month
- ☆16Updated 6 months ago
- Utility to alias and dealias pango lineages☆23Updated last year
- ☆16Updated 2 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Updated last month
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- ☆49Updated 3 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆246Updated this week
- A web platform to detect and analyze variants of SARS-CoV-2☆60Updated this week
- Consensus sequences for each Pango lineage☆22Updated 3 months ago
- ☆74Updated last year
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last month
- Depth-weighted De-Mixing☆120Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 6 months ago
- Results from a model of global SARS-CoV-2 lineage competition☆39Updated 3 weeks ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated 2 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆109Updated 2 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆46Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆106Updated 5 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆171Updated 2 months ago
- FastTree 2: Approximately-Maximum-Likelihood Trees for Large Alignments☆18Updated 4 months ago
- Phage Annotation using Protein Structures☆129Updated last month