sars-cov-2-variants / lineage-proposalsLinks
Repository to propose and discuss lineages
☆51Updated last week
Alternatives and similar repositories for lineage-proposals
Users that are interested in lineage-proposals are comparing it to the libraries listed below
Sorting:
- Informal summaries of notable SARS-CoV-2 lineages☆110Updated 3 months ago
- ☆11Updated last year
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆247Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆443Updated 2 weeks ago
- Datasets for https://github.com/nextstrain/nextclade☆41Updated this week
- Repository for suggesting new lineages that should be added to the current scheme☆1,067Updated this week
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Updated this week
- Ultrafast Sample Placement on Existing Trees☆135Updated 2 weeks ago
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- ☆50Updated 3 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Consensus sequences for each Pango lineage☆22Updated 5 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last week
- Depth-weighted De-Mixing☆125Updated this week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated 2 weeks ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated last week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated 2 weeks ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Utility to alias and dealias pango lineages☆23Updated last year
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆109Updated last month
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆247Updated last week
- Results from a model of global SARS-CoV-2 lineage competition☆39Updated 2 months ago
- Nextstrain build for mpox virus☆50Updated last week
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 7 months ago
- A web platform to detect and analyze variants of SARS-CoV-2☆60Updated this week
- Systematic search of all known anti-phage systems.☆128Updated last month
- ☆74Updated last year
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆117Updated 6 months ago
- Programmatically interact with the GISAID database.☆79Updated 3 months ago