Alternatives and similar repositories for lineage-proposals

Users that are interested in lineage-proposals are comparing it to the libraries listed below

• neherlab / SARS-CoV-2_variant-reports
  Informal summaries of notable SARS-CoV-2 lineages
  ☆110Updated last month
• cov-lineages / pangoLEARN
  Store of the trained model for pangolin to access.
  ☆55Updated 2 years ago
• cov-lineages / pangolin
  Software package for assigning SARS-CoV-2 genome sequences to global lineages.
  ☆437Updated last month
• Memorablea / COVID-19-
  ☆11Updated 11 months ago
• outbreak-info / outbreak.info
  During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…
  ☆33Updated last week
• GenSpectrum / cov-spectrum-website
  A web platform to detect and analyze variants of SARS-CoV-2
  ☆61Updated this week
• ukhsa-collaboration / variant_definitions
  ☆74Updated last year
• cov-lineages / scorpio
  serious constellations of reoccurring phylogenetically-independent origin
  ☆39Updated last year
• cov-lineages / pangolin-data
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
  ☆31Updated last month
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆33Updated last week
• W-L / ProblematicSites_SARS-CoV2
  ☆49Updated 3 years ago
• MurrellGroup / lineages
  Results from a model of global SARS-CoV-2 lineage competition
  ☆39Updated last month
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• cov-lineages / pango-designation
  Repository for suggesting new lineages that should be added to the current scheme
  ☆1,066Updated this week
• nextstrain / ncov-clades-schema
  Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
  ☆15Updated last month
• nextstrain / nextclade
  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
  ☆240Updated last week
• theosanderson / taxonium
  A tool for exploring large trees in the browser
  ☆111Updated 2 weeks ago
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆107Updated 2 weeks ago
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆48Updated last week
• yatisht / usher
  Ultrafast Sample Placement on Existing Trees
  ☆130Updated last week
• jbloomlab / SARS2_RBD_Ab_escape_maps
  ☆16Updated 2 years ago
• corneliusroemer / pango-sequences
  Consensus sequences for each Pango lineage
  ☆22Updated 3 weeks ago
• nextstrain / nextclade_data
  Datasets for https://github.com/nextstrain/nextclade
  ☆35Updated this week
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 2 months ago
• WallauBioinfo / ViralFlow
  Workflow for viral analysis guided by reference
  ☆12Updated 2 months ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆75Updated 3 months ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆112Updated 8 months ago
• santa-dev / santa-sim
  A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
  ☆19Updated last year
• andersen-lab / Freyja
  Depth-weighted De-Mixing
  ☆116Updated this week