IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
☆24May 14, 2026Updated last week
Alternatives and similar repositories for irma
Users that are interested in irma are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated last week
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- Influenza data pipeline to automate genotyping assignment☆42Mar 19, 2026Updated 2 months ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆19Mar 25, 2026Updated last month
- ☆10Apr 16, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- UPHL's Reference Free Pipeline☆28Updated this week
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆14Updated this week
- Reference-based consensus creation☆61Updated this week
- ☆27May 22, 2025Updated last year
- An open-source software package to power microbial genomic databases☆71Updated this week
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated last month
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 2 weeks ago
- ☆21Apr 2, 2025Updated last year
- Results from a model of global SARS-CoV-2 lineage competition☆39Dec 17, 2025Updated 5 months ago
- viral-ngs: complete pipelines☆73Apr 9, 2026Updated last month
- ☆27Aug 2, 2023Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12May 10, 2026Updated 2 weeks ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 2 months ago
- ☆24Feb 2, 2026Updated 3 months ago
- ☆11Dec 24, 2024Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ☆25Jun 25, 2024Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆56Updated this week
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year
- The ARTIC fieldbioinformatics pipeline☆133Apr 28, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- ☆30Mar 6, 2025Updated last year
- nf-test utility functions☆12Updated this week
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 5 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Apr 30, 2026Updated 3 weeks ago