CDCgov / irmaLinks
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
☆17Updated 2 weeks ago
Alternatives and similar repositories for irma
Users that are interested in irma are comparing it to the libraries listed below
Sorting:
- REcombination BARcode detector.☆16Updated last year
- Influenza data pipeline to automate genotyping assignment☆37Updated 4 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆34Updated 10 months ago
- UPHL's Reference Free Pipeline☆27Updated last week
- Viral (meta)-genome assembly pipeline.☆17Updated last month
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Plasmid analysis using rearrangement distances☆45Updated last month
- Split k-mer analysis – version 2☆95Updated 2 months ago
- Genome size estimation from long read overlaps☆61Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- emm Automatic Isolate Labeller☆12Updated 6 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆22Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆99Updated 3 weeks ago
- Recombination-free trees☆60Updated last month
- ☆36Updated 6 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆40Updated last month
- ☆27Updated 4 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 2 months ago
- DNA search and [host] depletion using minimizers☆86Updated last week
- ☆23Updated this week
- Bacterial surveillance pipeline.☆26Updated this week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- µbinfie blog☆18Updated 2 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆21Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆47Updated this week
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14Updated 4 months ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago