gerstung-lab / SARS-CoV-2-InternationalLinks
International SARS-CoV-2 surveillance
☆38Updated 2 years ago
Alternatives and similar repositories for SARS-CoV-2-International
Users that are interested in SARS-CoV-2-International are comparing it to the libraries listed below
Sorting:
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- ☆10Updated 2 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- A web platform to detect and analyze variants of SARS-CoV-2☆60Updated this week
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Tools for evolutionary forecasting☆14Updated 2 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- Inference framework for serological data☆19Updated 2 months ago
- ☆27Updated 4 months ago
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- ☆19Updated 7 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated 3 weeks ago
- An Amazing Shiny App☆17Updated 4 years ago
- Nextstrain build for mpox virus☆50Updated last week
- ☆19Updated last month
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated 2 months ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13Updated 2 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆48Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Informal summaries of notable SARS-CoV-2 lineages☆110Updated 3 months ago
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- ☆74Updated last year
- Pathogen evolution, selection and immunity☆45Updated last year
- R package to Import and Modify SVG (XML) Graphic Files☆24Updated last year
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆19Updated last year
- babette is an R package to work with BEAST2☆46Updated last month