bernardo-de-almeida / DeepSTARRLinks
Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells
☆63Updated 2 years ago
Alternatives and similar repositories for DeepSTARR
Users that are interested in DeepSTARR are comparing it to the libraries listed below
Sorting:
- ☆28Updated 4 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated 2 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆59Updated last month
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆77Updated 3 weeks ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated this week
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- ☆22Updated last year
- ☆26Updated last month
- ☆23Updated 9 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆39Updated this week
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆15Updated last month
- This repository hosts a minimal version of a Python API for BPNet.☆40Updated 2 months ago
- Detection and couting alternative TSS in single cells☆14Updated last year
- ☆34Updated 2 years ago
- ☆39Updated 8 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ☆17Updated 7 months ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- code to run sei and obtain sei and sequence class predictions☆104Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 4 years ago