decomverse / ACTIONetLinks
ACTIONet single-cell analysis framework
☆42Updated last year
Alternatives and similar repositories for ACTIONet
Users that are interested in ACTIONet are comparing it to the libraries listed below
Sorting:
- cTPnet Package☆26Updated 3 years ago
- Single cell omics biology annotations☆51Updated 6 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆62Updated 5 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- ☆54Updated 11 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆41Updated last year
- Pipeline to run scE2G☆29Updated last week
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- ☆44Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Using TCR and expression for sequence embedding☆59Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 4 years ago
- ☆26Updated 4 years ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆88Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Geometry-preserving random sampling☆89Updated 11 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Unified access to several second-generation deconvolution methods☆79Updated 2 weeks ago
- pseudobulking on an AnnData object☆34Updated 7 months ago
- ☆31Updated 7 months ago