Alternatives and similar repositories for GENIE3:

Users that are interested in GENIE3 are comparing it to the libraries listed below

• UPSUTER / GEMLI
  ☆29Updated 3 weeks ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• YosefLab / ImpulseDE2
  ☆36Updated 2 years ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated 11 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• lhe17 / nebula
  ☆35Updated 11 months ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆40Updated 3 weeks ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated 11 months ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated last month
• ggjlab / scHCL
  ☆48Updated 4 years ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated 4 months ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• PoolLab / generecovery
  ☆29Updated last year
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆18Updated 3 months ago
• cole-trapnell-lab / cicero-release
  ☆57Updated 5 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 8 months ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 4 years ago
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆27Updated 4 months ago
• liulab-dfci / lisa2
  ☆29Updated 2 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆44Updated last year
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆42Updated 8 months ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆20Updated 5 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆50Updated last year