aertslab / GENIE3Links
GENIE3 (GEne Network Inference with Ensemble of trees) R-package
☆37Updated 3 years ago
Alternatives and similar repositories for GENIE3
Users that are interested in GENIE3 are comparing it to the libraries listed below
Sorting:
- Fast motif matching in R☆46Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- A single cell sequencing read simulator.☆33Updated 11 months ago
- ☆59Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- ☆39Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 11 months ago
- ☆34Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated 11 months ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Explore and download data from the recount3 project☆36Updated 4 months ago
- ☆35Updated 3 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- ☆37Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated this week
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year