AiviaCommunity / PythonForAiviaLinks
Python scripts library for Aivia. Ask your questions on the forum >>
☆14Updated last month
Alternatives and similar repositories for PythonForAivia
Users that are interested in PythonForAivia are comparing it to the libraries listed below
Sorting:
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 4 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- ☆36Updated last year
- Denoising via adaptive binning.☆13Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- A napari plugin to analysis point spread functions.☆12Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- ☆51Updated 8 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated 3 weeks ago
- ☆16Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated 2 weeks ago
- ☆12Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- dask empowered fast4dreg☆15Updated last year
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Lectures for a napari training course☆50Updated 2 years ago
- ☆12Updated 4 months ago