AiviaCommunity / PythonForAiviaLinks
Python scripts library for Aivia. Ask your questions on the forum >>
☆15Updated 2 weeks ago
Alternatives and similar repositories for PythonForAivia
Users that are interested in PythonForAivia are comparing it to the libraries listed below
Sorting:
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- An R package to detect collective spatio-temporal phenomena☆13Updated 9 months ago
- Accurate and efficient spot detection for microscopy data☆100Updated this week
- ☆51Updated 4 months ago
- ☆32Updated last year
- Denoising via adaptive binning.☆12Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Lectures for a napari training course☆50Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- A napari plugin to analysis point spread functions.☆13Updated 5 months ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- ☆18Updated 3 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 3 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 2 weeks ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- dask empowered fast4dreg☆12Updated 9 months ago
- ☆12Updated last month
- MethodsJ2☆14Updated 3 years ago
- ☆15Updated 2 years ago