nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
☆12Sep 19, 2025Updated 7 months ago
Alternatives and similar repositories for nRex
Users that are interested in nRex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tutorial on structural variant calling for short read sequencing data☆42Oct 24, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 9 months ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 4 months ago
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- Summary of a single or multiple MAF files.☆13Feb 5, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 2 years ago
- An R meta-package for the analysis of Next Generation Sequencing data☆27Apr 8, 2026Updated last week
- ☆10Oct 23, 2024Updated last year
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Apr 2, 2026Updated 2 weeks ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- ☆11Apr 10, 2026Updated last week
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Jan 11, 2026Updated 3 months ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆18Dec 8, 2021Updated 4 years ago
- Junction centric alternative splicing translator☆22Oct 31, 2022Updated 3 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 3 years ago
- ☆15Oct 7, 2025Updated 6 months ago
- A mini course on biological data analysis☆10Jan 16, 2025Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Apr 2, 2026Updated 2 weeks ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- ☆11May 21, 2024Updated last year
- Repo for software related to Software Systems at Olin College.☆13Oct 5, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 2 years ago
- ☆24Feb 23, 2026Updated last month
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆89Mar 27, 2026Updated 3 weeks ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆87Nov 13, 2025Updated 5 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Repositório para materiais e documentos usados na II ELAB☆22Sep 26, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SUSHI: Supporting User for SHell script Integration☆29Updated this week
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- ☆10Jul 10, 2023Updated 2 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- NGS perl modules☆10Updated this week
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆78Jun 30, 2025Updated 9 months ago