nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
☆12Sep 19, 2025Updated 5 months ago
Alternatives and similar repositories for nRex
Users that are interested in nRex are comparing it to the libraries listed below
Sorting:
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 3 months ago
- A tutorial on structural variant calling for short read sequencing data☆39Oct 24, 2024Updated last year
- Summary of a single or multiple MAF files.☆13Feb 5, 2025Updated last year
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- ☆24Feb 23, 2026Updated 2 weeks ago
- Junction centric alternative splicing translator☆21Oct 31, 2022Updated 3 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 2 months ago
- bioinformatics for peter☆11Apr 8, 2025Updated 11 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆81Nov 13, 2025Updated 3 months ago
- vembrane filters VCF records using python expressions☆68Jan 8, 2026Updated 2 months ago
- An R meta-package for the analysis of Next Generation Sequencing data☆27Feb 26, 2026Updated last week
- Anki decks for Technion courses☆13Apr 26, 2024Updated last year
- Metabolomics And Dereplication By Two-dimensional Experiments - MADByTE NMR Metabolomics Platform☆12Jul 23, 2025Updated 7 months ago
- Course repo for material related to CYPLAN 255 at UC Berkeley, Spring 2024☆11May 7, 2024Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆86Jan 5, 2026Updated 2 months ago
- A Python package for amino acid sequence analysis. Proforma 2.1 complicant.☆14Updated this week
- Homework for STAT 205A - Berkeley☆13Dec 9, 2014Updated 11 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- Quickstart tutorial Prerequisites Before reading this tutorial you should know a bit of Python. If you would like to refresh your memory,…☆14Dec 14, 2021Updated 4 years ago
- Course Projects for CS 61B, the data structures class at UC Berkeley, Spring 2014☆10Oct 7, 2014Updated 11 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Aug 3, 2023Updated 2 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆40Feb 25, 2026Updated last week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- Notes for "Introduction to Systems Programming" - 234124 (Technion)☆13Jul 3, 2022Updated 3 years ago
- This repository contains notes and documents related to my atmospheric modeling postdoctoral work at UC Berkeley☆10Oct 31, 2015Updated 10 years ago
- Tools for treatment high res mass spectrum of natural organic matter samples☆11Aug 4, 2023Updated 2 years ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated last month
- Deep Learning Scaling tutorial material for the Deep Learning for Science School at Berkeley Lab☆10Jul 19, 2019Updated 6 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 4 months ago
- CSC 541 Assignment 4 B-Trees Introduction The goals of this assignment are two-fold: To introduce you to searching data on disk using B…☆11May 10, 2015Updated 10 years ago
- self study java, through cs61b (http://www.cs.berkeley.edu/~jrs/61b/)☆10Jul 9, 2013Updated 12 years ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 4 years ago
- Deep Neural Network course @ UC Berkeley, taken Spring 2019☆10Dec 7, 2022Updated 3 years ago
- File Permissions Plugin is a repository that provides a simple plugin to change file permissions directly from IntelliJ.☆10Apr 27, 2025Updated 10 months ago
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Feb 19, 2026Updated 2 weeks ago
- Python3 version of UC Berkeley's CS 188 Pacman Capture the Flag project☆10Mar 14, 2024Updated last year