nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
☆12Sep 19, 2025Updated 11 months ago
Alternatives and similar repositories for nRex
Users that are interested in nRex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tutorial on structural variant calling for short read sequencing data☆45Oct 24, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Clonal structure identification through penalizing pairwise differences☆11Jul 22, 2026Updated last month
- Summary of a single or multiple MAF files.☆14Feb 5, 2025Updated last year
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 3 years ago
- An R meta-package for the analysis of Next Generation Sequencing data☆31Updated this week
- ☆10Oct 23, 2024Updated last year
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- ☆11Aug 12, 2026Updated 3 weeks ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆14Mar 4, 2023Updated 3 years ago
- Junction centric alternative splicing translator☆22May 22, 2026Updated 3 months ago
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Jan 11, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- SUSHI: Supporting User for SHell script Integration☆29Updated this week
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- ☆16Oct 7, 2025Updated 11 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Aug 27, 2026Updated last week
- A mini course on biological data analysis☆10Jan 16, 2025Updated last year
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Repositório para materiais e documentos usados na II ELAB☆22Sep 26, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repo for software related to Software Systems at Olin College.☆14Oct 5, 2015Updated 10 years ago
- ☆11May 21, 2024Updated 2 years ago
- This tool designs guides for use with the base editor technology.☆13Aug 11, 2023Updated 3 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Aug 18, 2026Updated 2 weeks ago
- ☆12Nov 23, 2020Updated 5 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Jul 10, 2023Updated 3 years ago
- Bad link reporter for GitHub repositories☆13Aug 3, 2026Updated last month
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- Crossmapped phenotype ontologies for the oncology domain☆16Updated this week
- ☆15Apr 20, 2023Updated 3 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆84Jun 30, 2025Updated last year