niaid / covid19-time-resolved
This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., John S. Tsang. "Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19" Cell (2021), In press.
☆15Updated 4 years ago
Alternatives and similar repositories for covid19-time-resolved:
Users that are interested in covid19-time-resolved are comparing it to the libraries listed below
- Normalize CITEseq Data☆65Updated 8 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- Cell type pipes for R☆51Updated last year
- Toolkit for Single-Cell Velocity☆54Updated 2 months ago
- Explore and share your scRNAseq clustering results☆48Updated last year
- An r package that works as a wrapper to homologene☆42Updated last year
- ☆45Updated 5 years ago
- ☆37Updated 8 years ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- ☆53Updated 4 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆38Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 4 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆29Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 2 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆43Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 5 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆47Updated last year
- An R-based interface for loom files☆66Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆38Updated 2 months ago