niaid / covid19-time-resolved
This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., John S. Tsang. "Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19" Cell (2021), In press.
☆15Updated 4 years ago
Alternatives and similar repositories for covid19-time-resolved:
Users that are interested in covid19-time-resolved are comparing it to the libraries listed below
- Normalize CITEseq Data☆65Updated 2 weeks ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Cell type pipes for R☆51Updated last year
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- ☆46Updated 5 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 6 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆75Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆27Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆41Updated 4 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆54Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Collection of cell type reference datasets.☆51Updated 10 months ago
- ☆47Updated last year
- ☆62Updated last month
- ☆29Updated 2 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆40Updated last month
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆22Updated this week
- ☆37Updated 8 years ago