Alternatives and similar repositories for covid19-time-resolved

Users that are interested in covid19-time-resolved are comparing it to the libraries listed below

• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆37Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆55Updated 4 months ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆74Updated 2 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 6 months ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆40Updated last year
• genesofeve / projectR
  ☆62Updated last month
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated 8 months ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 5 months ago
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆72Updated last week
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 6 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last week
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆30Updated 9 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• phipsonlab / speckle
  R package for analysing single cell data
  ☆55Updated 2 years ago
• Nanostring-Biostats / GeomxTools
  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…
  ☆42Updated 2 weeks ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• C3BI-pasteur-fr / UTechSCB-SCHNAPPs
  Shiny app for the analysis of single cell data
  ☆26Updated 2 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year