bhklab / CREAMLinks
CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes.
☆12Updated 4 years ago
Alternatives and similar repositories for CREAM
Users that are interested in CREAM are comparing it to the libraries listed below
Sorting:
- R package wrapping bedtools☆44Updated 10 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 10 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Differential Count Data Analysis Toolbox☆61Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated 2 months ago
- Detection of super-enhancers in cancer data☆21Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆96Updated last week
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated last year
- Devel repository for minfi☆64Updated last year
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- ATAC_seq Workshop☆13Updated 7 years ago
- Identify and correct invalid gene symbols☆62Updated last year
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Read HOMER motif analysis output in R.☆17Updated 7 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago