Predicts which missense mutations will drive growth of human cancers
☆12Sep 2, 2026Updated 2 months ago
Alternatives and similar repositories for CHASMplus
Users that are interested in CHASMplus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mutato is a toolkit for mutation analysis using DNA sequencing data☆12Nov 20, 2025Updated 11 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- ☆13Apr 25, 2024Updated 2 years ago
- ☆22Feb 5, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 5 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 3 years ago
- ☆12Oct 13, 2021Updated 5 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Sep 2, 2026Updated 2 months ago
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated last month
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- A modular annotation tool for genomic variants☆165Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolkit for manipulating FASTA and SAM files☆23Mar 14, 2024Updated 2 years ago
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 4 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- ☆14Nov 21, 2023Updated 2 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Updated this week
- A mosaic detecting software based on phasing and random forest☆72Dec 8, 2025Updated 11 months ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆34May 1, 2025Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆22Sep 15, 2026Updated last month
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- ☆11Aug 28, 2026Updated 2 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 12 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆10May 12, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Jan 30, 2023Updated 3 years ago
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Git Hooks Tutorial.☆17Jul 6, 2022Updated 4 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Updated this week
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
Are these results useful?