KarchinLab / open-cravatLinks
A modular annotation tool for genomic variants
☆125Updated last month
Alternatives and similar repositories for open-cravat
Users that are interested in open-cravat are comparing it to the libraries listed below
Sorting:
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 weeks ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 7 months ago
- A Python package for pharmacogenomics (PGx) research☆75Updated 5 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Tools to work with GWAS-VCF summary statistics files☆122Updated 9 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- ☆82Updated 6 years ago
- a Medical Genetics Sequence Analysis Pipeline☆83Updated last week
- The nimble & robust variant annotator☆182Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆80Updated last week
- NEAT read simulation tools☆98Updated 3 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆163Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆149Updated last week
- Annotates variants in MAF with OncoKB annotation.☆132Updated 3 weeks ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- using all the bits for echt rapid variant annotation and filtering☆153Updated 3 months ago
- Software program for checking sample matching for NGS data☆134Updated last year
- A small-RNA sequencing analysis pipeline☆87Updated last month
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- ☆178Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- Call and score variants from WGS/WES of rare disease patients.☆104Updated this week
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago