A modular annotation tool for genomic variants
☆146Feb 26, 2026Updated this week
Alternatives and similar repositories for open-cravat
Users that are interested in open-cravat are comparing it to the libraries listed below
Sorting:
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆304Nov 14, 2025Updated 3 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆58Updated this week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆86Jan 5, 2026Updated last month
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 weeks ago
- Structural variation and indel detection by local assembly☆252Sep 16, 2025Updated 5 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- The nimble & robust variant annotator☆190Apr 25, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- Annotation and Ranking of Structural Variation☆287Oct 7, 2025Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Oct 29, 2023Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Oct 19, 2025Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Oct 9, 2025Updated 4 months ago
- vembrane filters VCF records using python expressions☆68Jan 8, 2026Updated last month
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- Generic human DNA variant annotation pipeline☆60Feb 13, 2024Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- RUFUS k-mer based genomic variant detection☆54Jan 5, 2026Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Feb 23, 2026Updated last week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- VCF visualization interface☆177Updated this week
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 4 months ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆206May 28, 2023Updated 2 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆92Aug 22, 2025Updated 6 months ago
- genetic variant expressions, annotation, and filtering for great good.☆272Dec 15, 2025Updated 2 months ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆174Updated this week
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 4 months ago