Alternatives and similar repositories for open-cravat

Users that are interested in open-cravat are comparing it to the libraries listed below

• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆84Updated last week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆97Updated 2 weeks ago
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆91Updated 3 months ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆112Updated last week
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆81Updated last month
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated last year
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 2 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆40Updated 10 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated 2 weeks ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆119Updated last year
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆81Updated 10 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 2 months ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆89Updated 4 months ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆40Updated 4 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆90Updated 2 months ago
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆84Updated last year
• broadinstitute / gnomad_qc
  ☆68Updated last week
• griffithlab / regtools
  Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
  ☆135Updated last year
• konradjk / loftee
  ☆186Updated 2 years ago
• ding-lab / CharGer
  Characterization of Germline variants
  ☆99Updated 3 years ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆92Updated last week
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆117Updated last year
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 3 years ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆137Updated last year
• WGLab / PennCNV
  Copy number vaiation detection from SNP arrays
  ☆96Updated last year
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆99Updated 3 years ago
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆55Updated 5 years ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆72Updated 5 years ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 3 years ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆188Updated last year