hammerlab / vcf-annotate-polyphenLinks
A tool to annotate human VCF files with PolyPhen2 effect measures
☆10Updated 2 years ago
Alternatives and similar repositories for vcf-annotate-polyphen
Users that are interested in vcf-annotate-polyphen are comparing it to the libraries listed below
Sorting:
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- A better, faster way to count guides in CRISPR screens.☆33Updated 6 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 3 weeks ago
- ☆17Updated 2 months ago
- RNA Fusion Detection and Quantification☆18Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- ☆28Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- ☆39Updated 3 months ago
- A tool for timing complex copy number gains in cancer.☆18Updated 2 months ago
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14Updated last week
- analysis pipeline for CODEC data☆12Updated 4 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆12Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Builds a PEP from SRA or GEO accessions☆53Updated 3 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A python package for showing JBrowse views☆26Updated last year
- Deep learning-based structural variant filtering method☆39Updated last year
- pathway based data integration and visualization☆41Updated 6 months ago