Alternatives and similar repositories for vcf-annotate-polyphen

Users that are interested in vcf-annotate-polyphen are comparing it to the libraries listed below

• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆57Updated 3 weeks ago
• stjude / proteinpaint
  Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
  ☆44Updated this week
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated 2 years ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated 2 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 3 years ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• gagneurlab / absplice
  ☆40Updated 6 months ago
• diskin-lab-chop / AutoGVP
  ☆23Updated this week
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last month
• reiterlab / ctdna
  Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
  ☆13Updated 5 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆34Updated 9 months ago
• tgen / CovGen
  Creates a target specific exome_full192.coverage.txt file required by MutSig
  ☆21Updated 4 years ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 3 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• broadinstitute / CODECsuite
  analysis pipeline for CODEC data
  ☆12Updated 2 months ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 7 months ago
• ExpressionAnalysis / STAR-SEQR
  RNA Fusion Detection and Quantification
  ☆18Updated 7 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated 3 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆60Updated 8 months ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆22Updated last month
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 5 months ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆76Updated 3 months ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆26Updated 8 months ago