hammerlab / vcf-annotate-polyphenLinks
A tool to annotate human VCF files with PolyPhen2 effect measures
☆10Updated 2 years ago
Alternatives and similar repositories for vcf-annotate-polyphen
Users that are interested in vcf-annotate-polyphen are comparing it to the libraries listed below
Sorting:
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated 2 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- ☆27Updated 2 years ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- ☆39Updated 3 weeks ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 8 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- ☆21Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- Quality of life improvements for Bioinformatics in Python.☆30Updated 2 weeks ago
- Filters for Next Generation Sequencing☆12Updated 8 months ago
- pathway based data integration and visualization☆41Updated 3 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆23Updated 2 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆26Updated 2 weeks ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- Variant catalogue pipeline☆25Updated 2 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago