sigven / cpsrLinks
Cancer Predisposition Sequencing Reporter (CPSR)
☆62Updated last month
Alternatives and similar repositories for cpsr
Users that are interested in cpsr are comparing it to the libraries listed below
Sorting:
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated last week
- Multi-sample somatic variant caller☆52Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Generic human DNA variant annotation pipeline☆59Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆75Updated 3 weeks ago
- BigWig and BAM utilities☆99Updated last year
- R package designed to simplify structural variant analysis☆74Updated 3 years ago
- Tumor Mutational Burden☆63Updated 4 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- QDNAseq package for Bioconductor☆53Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- ☆72Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated last year
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated 2 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 2 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated last month
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆92Updated this week
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 9 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago