True-North-Intelligent-Algorithms / tnia-pythonLinks
A collection of useful python utilities from True North Intelligent Algorithms
☆42Updated 2 weeks ago
Alternatives and similar repositories for tnia-python
Users that are interested in tnia-python are comparing it to the libraries listed below
Sorting:
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 7 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated 3 weeks ago
- ☆51Updated 7 months ago
- ☆36Updated last year
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Updated 5 years ago
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 3 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A napari plugin for making animations☆89Updated 3 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆174Updated 7 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Updated 3 months ago
- ☆25Updated last week
- MSSR Plugin☆14Updated last year
- Particle tracking by solving linear assignment problem.☆61Updated 3 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 4 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 2 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 3 weeks ago