A collection of useful python utilities from True North Intelligent Algorithms
☆43Feb 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for tnia-python
Users that are interested in tnia-python are comparing it to the libraries listed below
Sorting:
- ☆26Jan 27, 2026Updated last month
- A napari plugin to analysis point spread functions.☆12Mar 28, 2025Updated 11 months ago
- ☆15Jul 29, 2022Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- Native Qt interface for Meta's Segment Anything 2 in Images and Videos☆31Sep 26, 2024Updated last year
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆28Updated this week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 2 months ago
- ☆12Jan 27, 2024Updated 2 years ago
- The 2025 version of cellPLATO☆15Jan 23, 2026Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 3 months ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 4 years ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆16Jul 16, 2019Updated 6 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 4 months ago
- ☆36Mar 22, 2024Updated last year
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated last month
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆28Nov 17, 2025Updated 3 months ago
- GPU accelerated image/volume processing in Python☆113Feb 10, 2026Updated 2 weeks ago
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated 2 weeks ago
- Segment images utilizing pre-trained neural networks as feature extractors☆47Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Apr 9, 2020Updated 5 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 8 months ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- ☆17Jan 13, 2025Updated last year
- napari widgets for start-to-finish batch processing☆15Jan 2, 2026Updated last month
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- ☆14Jan 26, 2021Updated 5 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Apr 30, 2023Updated 2 years ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated last week
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- ☆15Updated this week
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 11, 2026Updated 2 weeks ago